[Molvis-list] Structural alignment of alpha carbons?

[timothy driscoll]

On 2005-01-04 (16:17) Eric Martz wrote:

>Can someone please tell me how to align a selected subset of atoms
>in two PDB file models that contain only alpha carbon atoms?
>Normally I do structural alignments in DeepView, but it seems to
>reject alpha-carbon-only models. Is there free software for Windows
>(or a server) that can align alpha-carbon only models? Or will
>someone kindly volunteer to do a single alignment for me?
>


hi Eric,

will this work?

<http://cl.sdsc.edu/ce.html>

I don't see any restrictions against alpha-carbon only chains.

regards,

tim
-- 
Timothy Driscoll
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