[Molvis-list] Structural alignment of alpha carbons?

[Ilan Samish]

Hi Eric,

If you're interested in local alignment + core detection, check:
http://bioinfo3d.cs.tau.ac.il/c_alpha_match/

For multiple local alignment + core detection:
http://bioinfo3d.cs.tau.ac.il/MultiProt/
or send me the files and I'll run them on sequence-independent MUSTA.

Best regards,

ilan

________________________
Ilan.Samish at weizmann.ac.il
Plant Sciences Department
Weizmann Institute of Science
Tel: 972 8 934 4300
Fax: 972 8 934 4181
Mobile: 972 52 3321150
~~~~~~~~~~~~~~~~~~~
Co-organizer of 3Dsig -
Annual Structural Bioinformatics meeting
http://3Dsig.weizmann.ac.il/
3Dsig at weizmann.ac.il


----- Original Message ----- 
From: "timothy driscoll" <molvisions at mac.com>
To: "Molecular Visualization, especially in education with freeware"
<molvis-list at bioinformatics.org>
Sent: Tuesday, January 04, 2005 11:41 PM
Subject: Re: [Molvis-list] Structural alignment of alpha carbons?


> On 2005-01-04 (16:17) Eric Martz wrote:
>
> >Can someone please tell me how to align a selected subset of atoms
> >in two PDB file models that contain only alpha carbon atoms?
> >Normally I do structural alignments in DeepView, but it seems to
> >reject alpha-carbon-only models. Is there free software for Windows
> >(or a server) that can align alpha-carbon only models? Or will
> >someone kindly volunteer to do a single alignment for me?
> >
>
>
> hi Eric,
>
> will this work?
>
> <http://cl.sdsc.edu/ce.html>
>
> I don't see any restrictions against alpha-carbon only chains.
>
> regards,
>
> tim
> -- 
> Timothy Driscoll
> molvisions - see, grasp, learn.
> <http://www.molvisions.com/>
> usa:north carolina:wake forest
>
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