[Molvis-list] polygons and using pymol

abhijit abi_chem at iiit.net
Thu Feb 10 23:48:39 EST 2005

Nadine asked 
"I would appreciate it if someone could tell me how to  draw a line between
two given atoms, using Pymol. If this is not possible with Pymol, what
software could do it?"
Sinasi Ellialtioglu asked
"I am a Rasmol user, and since this list is now bringing together a
multi-software society I would like to ask if drawing polygons around oxygen
octahedra or tetrahedra in various crystal structures (like in YBCO) is
possible in any of Rasmol, Jmol, Chime, Protein Explorer, or else."

>>>>>>>>I have not used pymol. But one can make lines connecting any two
atoms by modifying CONECT records in the PDB files and view it in Rasmol. If
you send the corresponding pdb file to me I can ask my students to modify
the file for the desired result.

Dr. Abhijit Mitra
Associate Professor
Coordinator Bioinformatics Program and Bioinformatics Research Centre
International Instutute of Information Technology (Deemed University)
Gachibowli, Hyderabad 500 019, INDIA
Phone:  +91 40 2300 1967 ext 171
Fax:    +91 40 2300 1413
Home:   +91 40 2300 6281
URL:    http://www.iiit.net
Email:  abi_chem at iiit.net

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