[Owl-devel] New package owl.connections

Jose M. Duarte jose.m.duarte at gmail.com
Tue Mar 16 11:58:09 EDT 2010

Cheers Henning

That's awesone. I surely will be using some of those soon. I will also need
to do quite a lot with Uniprot so definitely the UniprotConnector will be
also very useful for me.

If you need help with that just let me know.


On 16 March 2010 15:07, Henning Stehr <stehr at molgen.mpg.de> wrote:

> Dear developers,
> I have just commited a new package owl.connections which is supposed
> to contain connector classes to online databases and services.
> The first such classes are
> PhosphoSitePlusConnection - for accessing a popular database of
> posttranslational modifications and
> PDomainsConnection - for accessing a very useful webservice which
> calculates structural domains using a variety of methods including
> Scop, Cath, DomainParser, ProteinDomainParser and others
> The results of such queries are implemented using the feature
> interface (see owl.features):
> PhosphoSitePlusFeature - for protein modifications from PhosphoSitePlus
> StructuralDomainFeature - for structural domains from pDomains
> Such features can be added to any structure or sequence object
> implementing the owl.features.HasFeatures interface.
> Two more classes that will probably be added to the package later are:
> PrositeScanner - currently in owl.proteinstructure
> UniprotConnector - already working for me but need to sort out some
> things with dependencies before commiting
> Cheers,
> Henning
> _______________________________________________
> Owl-devel mailing list
> Owl-devel at bioinformatics.org
> http://www.bioinformatics.org/mailman/listinfo/owl-devel
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