[Pdbwiki-devel] Uniprot mapping & error reports question

Dan Bolser dan.bolser at gmail.com
Tue Jul 28 12:56:41 EDT 2009

2009/7/28 Jose M. Duarte <jose.m.duarte at gmail.com>:
> 2009/7/28 Henning Stehr <stehr at molgen.mpg.de>
>> We have fixed the script such that this should not
>> happen for future entries. If time permits, Jose
>> will also update the old entries with the search-and-replace-script.
> I'm running the replace script now. Simply removing all broken links.
> I'm not adding a correct uniprot mapping to replace the broken link because
> that would require some parsing of Uniprot mapping etc. I thought it'd be
> better to do all that together whenever we get some time to redo the whole
> Uniprot mapping issue properly (i.e. by getting data from SIFTS at
> http://www.ebi.ac.uk/msd/sifts/ftp.html)

Yeah, good idea.

I'd like to stuff all the data into SMW to see what happens... i.e.
users could edit the mapping on a per residue level and we could
export it via a webservice (in theory)...


> Jose
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