[Pdbwiki-devel] Move of upload pipeline

Henning Stehr stehr at molgen.mpg.de
Tue Dec 21 12:04:12 EST 2010

Thanks Jose!

Did you check in to the SVN on bifx.org or still on talyn?

Have a good holiday!


On Tue, Dec 21, 2010 at 5:58 PM, Jose M. Duarte <jose.m.duarte at gmail.com> wrote:
> Hi guys
> So I've tried for the first time the upload pipeline from bio.cc. I
> basically only needed changing a few hard coded paths and the table names to
> capitals.
> I've run it testing against pdbwiki.molgen.mpg.de (still up) and it worked.
> The thing is that the the pdbwiki.molgen was more up to date than the pdbase
> in bio.cc so it only needed to remove entries, so it's not a full test yet
> (and it's still running now). But it's a start at least. By the way I've
> modified the paths and all that in the repo so if we svn update at the mpimg
> site it will overwrite the files with wrong paths and all that.
> For the moment we at least have things more or less set-up so that we can
> start running it from bio.cc regularly soon. The cronjob at mpimg is still
> on anyway.
> For info pipeline files are in /BiO/Store/PDBWiki/ with more or less the
> same layout as before.
> That's it for now, I'm off home tomorrow. Hope you guys enjoy the holidays!
> (I'll be reading email but less regularly)
> Jose
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