[Pdbwiki-devel] PDB version 4
dan.bolser at gmail.com
Mon Jul 18 05:07:01 EDT 2011
The unzipping is based on time stamp of the files, so if the remed
files have a historic time stamp (for some reason), they won't be
One solution if the above guess is right would be to just remove the
entire unzipped archive and run the unzip job from scratch. That
shouldn't take longer than about 24 hours (the current incremental job
takes just a few minutes).
I'm into my last three days here at Dundee, so I can't look just now.
Sorry about that!
On 18 July 2011 10:00, Jose M. Duarte <jose.m.duarte at gmail.com> wrote:
> Hi guys
> So as expected weird things are happening. Henning it seems that the pdbase
> upload ran through but there are some strange counts:
> Zipped cif files: 74428
> Unzipped cif files: 74297
> Entries in struct: 74293
> What's strange is why quite a few files failed to unzip. Any ideas? The
> count of unzipped files coincides with last week's pdb count, so definitely
> there's something weird here.
> On 15 July 2011 19:00, Dan Bolser <dan.bolser at gmail.com> wrote:
>> Thanks Jose!
>> On 15 July 2011 17:51, Jose M. Duarte <jose.m.duarte at gmail.com> wrote:
>> > FYI I've stopped the pdbwiki update for next week.
>> > This week they've released the next remediation issue of the PDB archive
>> > and
>> > I can expect things going wrong with the pipeline. Well for sure many
>> > thousand structures will be updated so the pdbwiki update will take very
>> > long. I'll check on monday.
>> > Nice weekend!
>> > Jose
>> > _______________________________________________
>> > Pdbwiki-devel mailing list
>> > Pdbwiki-devel at bioinformatics.org
>> > http://www.bioinformatics.org/mailman/listinfo/pdbwiki-devel
>> > http://www.pdbwiki.org
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