[J.W. Bizzaro] But let's reverse the question. If we need XML files for (1) working with large data, (2) passing data across the Internet and to CORBA systems, and (3) archiving data, then what do we need Paos for? I know it was my idea to choose Paos, but I'm asking if everyone thinks it fits, and where it fits, considering the model I've been describing. [Later] How about having Paos handle the workflow data while XML handles the biological, instead of defining an XML that mixes the two? I guess it depends on just how Paos passes the objects. It would be best if Paos could be called just once, each time the workflow data needed to be passed, passing it not only to the next process but to the Benchtop too...hmmm. I wouldn't want Loci to be anymore centralized than that. I totally agree that Paos shouldn't shuffle around real data. I see the role of Paos as a coordination tool but not as a database management system. I attached a GIF picture to this mail. This picture contains Gnome clients, Paos server, and Tool Manager (excuse me if I introduce yet another set of terms). Gnome clients and Tool Manager are Paos clients. A Gnome client consists of a GCL editor and progress monitor, among other things. A Tool Manager - parses XML data and forwards it to the actual tool, - turn the result of a tool into XML data and send it to another tool manager - sends status information to a Paos server (e.g. processing started or completed, or processing ran out of memory), - receives notifications from a Paos server (e.g. "suspend", "abort", or status query), - queries a Paos server about where to send results to, The thin lines are communicating Python objects, the thick lines communicate XML structures. Note that the destination of Tool Manager can also be a Gnome client which is used to visualize results. Another question in the discussion was whether to use Python objects for communication or XML. XML is safer because it is an accepted and extensible standard. However, transfering serialized objects was the performance bottleneck in the Chautauqua workflow system (which uses Paos) and I introduced a bit of trickery to reduce this overhead. So I would recommend sticking with Python objects for Paos communications but use XML for everything else. Carlos -------------- next part -------------- A non-text attachment was scrubbed... Name: tulip-architecture.gif Type: image/gif Size: 3548 bytes Desc: architecture Url : http://bioinformatics.org/pipermail/pipet-devel/attachments/19990228/060d6d63/tulip-architecture.gif