"J.W. Bizzaro" wrote: > > > Hi Jennifer. I'm a bit confused to see "GCG," "administratively simple," and > "user friendly" used in the same sentence :-) Are we talking about the same > GCG, the Wisconsin Package? I think there is a Web interface, if that's what > you're referring to. I'm embarrassed to say that I have been too lazy to really learn HTML - my husband sorta taught me a few things, but why not let him do my HTML stuff for me? :) (his stuff is at http://alloy.net) So, the GCG SeqWeb would be administratively simple in comparison to the alternative: my own home-built web interface to software of our choice (a la http://bioweb.pasteur.fr/intro-uk.html#log). We don't have a yearly operating budget for the beast (doh!), hence my reluctance to completely take the GCG plunge. And then the users likely wouldn't make use of all the nifty tools - just sequence analysis and phylogenetic analysis... > > The other system will likely be some sort of Linux Beowulf cluster > > without GCG, and for the time being, without a customized friendly user > > interface - unless of course Loci comes into fruition soon :) > > Wow. Is the cluster going to be set up in-house or come pre-built by a Linux > system builder? As you may have read, Loci can gains computational "power" by > distributing analyses to more powerful systems. It would be nice to see it > running on a Beowulf cluster. We are currently contemplating two systems, both somewhere in-house: 1. A Sun E3500 or a comparable Alpha-based system, with ETA being the end of the summer - designed around GCG, for now. 2. Tentatively, a Microway Alpha-based 16-node Linux Beowulf cluster. Our serious constraint is space - or lack thereof, otherwise I'd just update UPenn's Phylofarm or NIH's LOBOS system. . o O (who gets money for an expensive system without thinking about where they're gonna put it or how they're gonna cool it?!?!) We had scoped out a small room, currently being used as a computer junkyard - but I'm getting the impression from the building engineers that a/c in that space will be very challenging given the fact that there is little to no direct ventilation currently. Oh, and then there is the problem with the teeny tiny LEAK in the ceiling. > > > When I get one or both of these systems, I would be more than happy to > > alpha and/or beta test (and I can think of a few users who might be good > > guinea pigs for the user front-end). > > Great. Do you have a system running GNOME at the moment? If so, it shouldn't > be much to get the GUI running that I've been working on. Right now, I don't have anything here (windowmaker on my linux box at home). They've got me in temporary office space (Nothing like arriving and being told "oh... don't unpack... you'll be moving in a few weeks...") and I don't even have my own computer - just this nasty NT thing. I'm waiting to hear back from Sun to see if they'll be giving me an UltraSparc 10 through their academic grant program. BTW, I'm on a gcg-managers mailing list (http://molbio.unmc.edu for details) and I mentioned Loci on there :) so you might see a few extra hits on the web page over the next couple of days. cheers, -j -------------------------- Jennifer Steinbachs Computational Biologist Dept. of Botany The Field Museum Chicago, IL 60605-2496 office: 312-665-7810 fax: 312-665-7158 --------------------------