[Pipet Devel] overflow compile problems

[J.W. Bizzaro]

I upgraded to gcc 2.96 and glibc 2.2, and I still get some errors compiling
from the latest source:

----------------------------------------
make[3]: Entering directory `/usr/src/Overflow/Overflow/vflow/src'
/bin/sh ../libtool --mode=link c++  -g -O2 -L/usr/lib -o vflow  main.o Probe.o
TextProbe.o PlotProbe.o canvas-background.o GUINode.o GUINetwork.o
GUIDocument.o GUITerminal.o GUILink.o GUINodeParameters.o GUINetTerminal.o
GUINetPopup.o GRunContext.o -rdynamic -L/usr/lib -L/usr/X11R6/lib -rdynamic
-lgnomeui -lart_lgpl -lgdk_imlib -lSM -lICE -lgtk -lgdk -lgmodule -lXi -lXext
-lX11 -lgnome -lgnomesupport -lesd -laudiofile -lm -ldb -lglib -ldl 
-L/usr/lib -lxml -lz -L/usr/lib -lgthread -lglib -lpthread 
../../data-flow/src/libflow.la 	-lrfftw -lfftw -lpthread 
c++ -g -O2 -L/usr/lib -o .libs/vflow main.o Probe.o TextProbe.o PlotProbe.o
canvas-background.o GUINode.o GUINetwork.o GUIDocument.o GUITerminal.o
GUILink.o GUINodeParameters.o GUINetTerminal.o GUINetPopup.o GRunContext.o
-rdynamic -L/usr/lib -L/usr/X11R6/lib -rdynamic -lgnomeui -lart_lgpl
-lgdk_imlib -lSM -lICE -lgtk -lgdk -lgmodule -lXi -lXext -lX11 -lgnome
-lgnomesupport -lesd -laudiofile -lm -ldb -lglib -ldl -L/usr/lib -lxml -lz
-L/usr/lib -lgthread -lglib -lpthread ../../data-flow/src/.libs/libflow.so
-lpthread -ldl -lm -lrfftw -lfftw -lpthread -Wl,--rpath -Wl,/opt/overflow/lib
Probe.o: In function `_Rb_tree<basic_string<char, string_char_traits<char>,
__default_alloc_template<true, 0> >, pair<basic_string<char,
string_char_traits<char>, __default_alloc_template<true, 0> > const,
pair<Ptr<Object>, bool> >, _Select1st<pair<basic_string<char,
string_char_traits<char>, __default_alloc_template<true, 0> > const,
pair<Ptr<Object>, bool> > >, less<basic_string<char, string_char_traits<char>,
__default_alloc_template<true, 0> > >, allocator<pair<Ptr<Object>, bool> >
>::_M_copy(_Rb_tree_node<pair<basic_string<char, string_char_traits<char>, __default_alloc_template<true, 0> > const, pair<Ptr<Object>, bool> > > *, _Rb_tree_node<pair<basic_string<char, string_char_traits<char>, __default_alloc_template<true, 0> > const, pair<Ptr<Object>, bool> > > *)':
/usr/include/NodeFactory.h(.gnu.linkonce.d.__vt_5Probe+0x34): undefined
reference to `Node::setDebugMode(void)'
/usr/include/NodeFactory.h(.gnu.linkonce.d.__vt_5Probe+0x40): undefined
reference to `Node::resetDebugMode(void)'
TextProbe.o: In function `NodeFactory<TextProbe>::Create(basic_string<char,
string_char_traits<char>, __default_alloc_template<true, 0> > const &,
ParameterSet const &)':
/usr/src/Overflow/Overflow/vflow/src/../../data-flow/include/sstream.h(.gnu.linkonce.d.__vt_9TextProbe+0x34):
undefined reference to `Node::setDebugMode(void)'
/usr/src/Overflow/Overflow/vflow/src/../../data-flow/include/sstream.h(.gnu.linkonce.d.__vt_9TextProbe+0x40):
undefined reference to `Node::resetDebugMode(void)'
PlotProbe.o: In function `NodeFactory<PlotProbe>::Create(basic_string<char,
string_char_traits<char>, __default_alloc_template<true, 0> > const &,
ParameterSet const &)':
/usr/local/include/g++-3/stl_vector.h(.gnu.linkonce.d.__vt_9PlotProbe+0x34):
undefined reference to `Node::setDebugMode(void)'
/usr/local/include/g++-3/stl_vector.h(.gnu.linkonce.d.__vt_9PlotProbe+0x40):
undefined reference to `Node::resetDebugMode(void)'
collect2: ld returned 1 exit status
make[3]: *** [vflow] Error 1
make[3]: Leaving directory `/usr/src/Overflow/Overflow/vflow/src'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/usr/src/Overflow/Overflow/vflow'
make[1]: *** [all-recursive-am] Error 2
make[1]: Leaving directory `/usr/src/Overflow/Overflow/vflow'
make: *** [all-recursive] Error 1
---------------------------------------

Jeff
-- 
J.W. Bizzaro                                           jeff at bioinformatics.org
Director, Bioinformatics.org: The Open Lab     http://bioinformatics.org/~jeff
"All those scientists--they're all alike!  They say they're working for us,
but what they really want is to rule the world!" 
  -- Angry Villager, Young Frankenstein
--