[Proteopedia] New pages and capabilities

[Eric Martz]

This message is from Karsten Theis. I am sending it to get around 
technical difficulties.

------------------

Hi All,

I wanted to let you know about some new content and some new tutorial pages:

*Content:*

1) I made some new carbohydrate pages fairly recently, and they are now 
all linked on the carbohydrates <http://proteopedia.org/w/Carbohydrates> 
page (cellulose, amylose).
2) I made some pages concerning stereochemistry 
<http://proteopedia.org/wiki/index.php/Stereochemistry>. The parent page 
links to all of them in the "See also" section. These have been great 
for teaching remotely when it comes to carbohydrate stereochemistry 
(e.g. Fisher projection).

*Tutorials:*

There is a viewing guide 
<http://proteopedia.org/wiki/index.php/Viewing_guide>, and a rubric 
<http://proteopedia.org/wiki/index.php/Image:Proteopedia_rubrics.pdf> to 
evaluate pages and 3D scenes. There are tutorials on the more advanced 
uses of Jmol, including Jmol/interactivity, Jmol/superposition, and 
User:Karsten Theis/Electron density. Examples can be found at 
http://proteopedia.org/wiki/index.php/Talk:Garman_lab:_Interconversion_of_lysosomal_enzyme_specificities 
and 
http://proteopedia.org/wiki/index.php/Talk:Schubert_lab:_bacterial_InIC_disrupts_human_Tuba_complexes

I also made a tutorial for remixing Proteopedia articles (reusing text 
and 3D scenes): Remixing <http://proteopedia.org/wiki/index.php/Remixing>

*New features:*

Jaim and Angel worked on new features in the scene authoring tool (spin 
on/off expanded to offer rock or wobble) and in the way we can link to 
scenes: A link like https://proteopedia.org/w/Lysozyme#hydrogen%20bonds 
goes straight to the "hydrogen bond" green link, shows the opening scene 
and then switches to the hydrogen bond scene. These new features are 
also illustrated here: 
http://proteopedia.org/wiki/index.php/User:Karsten_Theis/Molecular_Interactions 
and here: 
http://proteopedia.org/wiki/index.php/User:Karsten_Theis/Favorite_3D_scenes. 


Take good care,
Karsten


--
Karsten Theis
Chemical & Physical Sciences Department
Westfield State College
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.bioinformatics.org/pipermail/proteopedialist-for-users/attachments/20201010/e3ac514e/attachment.html>