[ssml] HMM to aa frequency

[rfsouza at cecm.usp.br]

Hi,

Does any of you know if there is a way to build a matrix of expected
aminoacid
frequencies for each position of an HMM model, like Pfam_fs or Pfam_ls? I
want
to compare the expected aa frequencies for each PFam HMM model to the actual
frequencies in the Pfam-A.full alignment.

Robson