On May 18, 2005, at 4:24 PM, Kevin Karplus wrote: > Goel, Manisha asked >> I need to analyse some substitution matrices, like calculate relative >> entropy and matrix subtractions etc. >> I was wondering if any simple tool is available for such >> calculations or >> do people always use inhouse mathematics programs to do this ? > > It probably takes less time to write your own tiny programs in Perl or > Python than to find and learn how to use someone else's. > > If you want a language with good support for matrices, you could try > Matlab or even R. If you don't have Matlab, you could use the Open Source equivalent: Octave. Regards, - Robert