[Next-Generation Sequencing Book]

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[ Ticket #1183 ] Edit --> copy should use FASTA format
Date:
05/16/13 18:18
Submitted by:
B_Fristensky 		Assigned to:
Alvare
Category:
bioLegato 		Priority:
3
Ticket group:
Bug 		Resolution:
Resolved
Summary:
Edit --> copy should use FASTA format
Original submission:
BioLegato supports copy and paste to and from the system clipboard. However, Edit--> Copy converts sequences into pseudo-GenBank format, which virtually no web programs will accept. Copy should convert into FASTA format, so that sequences can be pasted into web forms.
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Followups
Comment Date By
bldna, blprotein, blnalign, blpalign : Added a choice to Export Foreign Format to send output to text editor, rather than a file. 03/08/15 19:36 B_Fristensky
Maybe the best solution is to create an Open in Text Editor
Function (also open in Spreadsheet for table canvas)
that has a menu for choosing the format. This makes sense anyway, because you can't predict what format a web form might want. We run the thing through readseq and then open i a text editor. 		03/08/15 17:27 B_Fristensky
Actually, it's not that simple. Some users may want to Copy and Paste between BioLegato windows. This is in effect the same as Copy Out and Paste in, except it bypasses the BioLegato clipboard.

Others may want to copy and paste to a web form. The former needs GenBank format to preserve feature annotation, the latter needs fasta format, because most web forms will understand fasta format.
03/08/15 17:20 B_Fristensky
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Ticket change history
Field Old value Date By
status_id Open 03/08/15 19:40 B_Fristensky
resolution_id Not Resolved 03/08/15 19:40 B_Fristensky
close_date 12/31/69 19:00 03/08/15 19:40 B_Fristensky
status_id Pending 05/16/13 18:18 B_Fristensky
priority 5 05/16/13 18:18 B_Fristensky
assigned_to unset 05/16/13 18:18 B_Fristensky
resolution_id Unset 05/16/13 18:18 B_Fristensky

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