pl.krakow.cmuj.bioinformatics.jellipse
Class AvgDihedralAngle

java.lang.Object
  pl.krakow.cmuj.bioinformatics.jellipse.AvgDihedralAngle

All Implemented Interfaces:

Plottable

 class AvgDihedralAngle
extends java.lang.Object
implements Plottable

Enables plotting averaged dihedral angle between consecutive peptide bond planes computed along the whole polypeptide chain.

Constructor Summary

AvgDihedralAngle()

Method Summary

float	getMaxValue(Peptide ch)
float	getMinValue(Peptide ch)
float	getValue(Aminoacid aacid)
boolean	isCorrect(float value)
java.lang.String	toShortString()
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

AvgDihedralAngle

AvgDihedralAngle()

Method Detail

getValue

public float getValue(Aminoacid aacid)

Specified by:

getValue in interface Plottable

Parameters:

aacid - aminoacid for which the locally averaged dihedral angle beetween two consecutive bond planes is to be returned

Returns:

dihedral angle beetween two consecutive bond planes averaged about a particular aminoacid

getMinValue

public float getMinValue(Peptide ch)

Specified by:

getMinValue in interface Plottable

Parameters:

ch - chain for which minimum averaged dihedral angle is to be returned

Returns:

minimal averaged dihedral angle along the whole chain

getMaxValue

public float getMaxValue(Peptide ch)

Specified by:

getMaxValue in interface Plottable

Parameters:

ch - chain for which maximal averagedg dihedral angle is to be returned

Returns:

maximal averaged dihedral angle along the whole chain

isCorrect

public boolean isCorrect(float value)

Specified by:

isCorrect in interface Plottable

Parameters:

value - value of averaged dihedral angle to be tested for correctness

Returns:

true, if value given is correct (between 0 and 180 degrees)

toString

public java.lang.String toString()

Specified by:

toString in interface Plottable

Overrides:

toString in class java.lang.Object

Returns:

text identyfing property

toShortString

public java.lang.String toShortString()

Specified by:

toShortString in interface Plottable

Returns:

short text identyfing property