pl.krakow.cmuj.bioinformatics.jellipse
Class LnCurvature

java.lang.Object
  pl.krakow.cmuj.bioinformatics.jellipse.LnCurvature

All Implemented Interfaces:

Plottable

 class LnCurvature
extends java.lang.Object
implements Plottable

Enables plotting natural logarithm of the radius of the local curvature computed along the whole polypeptide chain.

Constructor Summary

LnCurvature()

Method Summary

float	getMaxValue(Peptide ch)
float	getMinValue(Peptide ch)
float	getValue(Aminoacid aacid)
boolean	isCorrect(float v)
java.lang.String	toShortString()
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

LnCurvature

LnCurvature()

Method Detail

getValue

public float getValue(Aminoacid aacid)

Specified by:

getValue in interface Plottable

Parameters:

aacid - aminoacid for which natural logarithm of the radius of the local chain curvature is to be returned

Returns:

natural logarithm of the radius of the local chain curvature for a particular aminoacid

getMinValue

public float getMinValue(Peptide ch)

Specified by:

getMinValue in interface Plottable

Parameters:

ch - chain for which minimum Ln(R) is to be returned

Returns:

mininal Ln(R) within the particulr chain

getMaxValue

public float getMaxValue(Peptide ch)

Specified by:

getMaxValue in interface Plottable

Parameters:

ch - chain for which maximal Ln(R) is to be returned

Returns:

maxmal Ln(R) within the particulr chain

isCorrect

public boolean isCorrect(float v)

Specified by:

isCorrect in interface Plottable

Parameters:

v - value of Ln(R) to be tested for corectness

Returns:

true, if tested value is correct (just > 0)

toString

public java.lang.String toString()

Specified by:

toString in interface Plottable

Overrides:

toString in class java.lang.Object

Returns:

text identyfing property

toShortString

public java.lang.String toShortString()

Specified by:

toShortString in interface Plottable

Returns:

short text identyfing property