Serialized Form

Package pl.krakow.cmuj.bioinformatics.jellipse

Class pl.krakow.cmuj.bioinformatics.jellipse.About extends javax.swing.JFrame implements Serializable

Serialized Fields

jLabelAffiliations

javax.swing.JLabel jLabelAffiliations

jLabelAuthor

javax.swing.JLabel jLabelAuthor

jLabelDate

javax.swing.JLabel jLabelDate

jLabelLogo

javax.swing.JLabel jLabelLogo

jLabelName

javax.swing.JLabel jLabelName

jTextFieldAuthorContact

javax.swing.JTextField jTextFieldAuthorContact

jTextFieldWebsite

javax.swing.JTextField jTextFieldWebsite

Class pl.krakow.cmuj.bioinformatics.jellipse.ChainChooser extends javax.swing.JFrame implements Serializable

Serialized Fields

selectedchainid

char selectedchainid

One-letter id of the chain that the user has choosen. If there is only one chain in the pdb file, it becomes ' ' (space) and is considered to be an unambiguous marker of the fact.

jLabel1

javax.swing.JLabel jLabel1

jPanel1

javax.swing.JPanel jPanel1

jPanel2

javax.swing.JPanel jPanel2

Class pl.krakow.cmuj.bioinformatics.jellipse.jEllipse extends javax.swing.JFrame implements Serializable

Serialized Fields

glcaps

net.java.games.jogl.GLCapabilities glcaps

glCanvasMolecule

net.java.games.jogl.GLCanvas glCanvasMolecule

glCanvasPlot

net.java.games.jogl.GLCanvas glCanvasPlot

jPanelRamachandranMap

javax.swing.JPanel jPanelRamachandranMap

jPanelLnRvsVPlot

javax.swing.JPanel jPanelLnRvsVPlot

animatorMolecule

jEllipse.NotSoGreedyAnimator animatorMolecule

animatorPlot

jEllipse.QuiteLazyAnimator animatorPlot

StructureRer

StructureRenderer StructureRer

PlotRer

PlotRenderer PlotRer

chain

Peptide chain

titlestr

java.lang.String titlestr

Property

Plottable Property

Colorscheme

ColorScheme Colorscheme

screenshotting_plot

boolean screenshotting_plot

screenshotting_structure

boolean screenshotting_structure

plotPbufferWidth

int plotPbufferWidth

plotPbufferHeight

int plotPbufferHeight

pdb

PdbFile pdb

selectedchainid

char selectedchainid

jMenuAnotherAnalyse

javax.swing.JMenuItem jMenuAnotherAnalyse

jMenuBar

javax.swing.JMenuBar jMenuBar

jMenuColorPB

javax.swing.JMenuItem jMenuColorPB

jMenuColors

javax.swing.JMenu jMenuColors

jMenuColorsRG

javax.swing.JMenuItem jMenuColorsRG

jMenuFile

javax.swing.JMenu jMenuFile

jMenuFilePlotExportAsPNG

javax.swing.JMenuItem jMenuFilePlotExportAsPNG

jMenuFileQuit

javax.swing.JMenuItem jMenuFileQuit

jMenuFileSeparator

javax.swing.JSeparator jMenuFileSeparator

jMenuFileSeparator0

javax.swing.JSeparator jMenuFileSeparator0

jMenuFileStructureExportAsPNG

javax.swing.JMenuItem jMenuFileStructureExportAsPNG

jMenuHelp

javax.swing.JMenu jMenuHelp

jMenuHelpAbout

javax.swing.JMenuItem jMenuHelpAbout

jMenuHelpQuickinfo

javax.swing.JMenuItem jMenuHelpQuickinfo

jMenuHelpReferences

javax.swing.JMenuItem jMenuHelpReferences

jMenuHighlight

javax.swing.JMenu jMenuHighlight

jMenuHighlightAbsDeviation

javax.swing.JMenuItem jMenuHighlightAbsDeviation

jMenuHighlightAvgDA

javax.swing.JMenuItem jMenuHighlightAvgDA

jMenuHighlightDeviation

javax.swing.JMenuItem jMenuHighlightDeviation

jMenuHighlightLnR

javax.swing.JMenuItem jMenuHighlightLnR

jMenuPropertyName

javax.swing.JMenu jMenuPropertyName

jMenuStructure

javax.swing.JMenu jMenuStructure

jMenuStructureBackboneComplete

javax.swing.JMenuItem jMenuStructureBackboneComplete

jMenuStructureBackboneVirtual

javax.swing.JMenuItem jMenuStructureBackboneVirtual

jMenuView

javax.swing.JMenu jMenuView

jMenuViewFullscreen

javax.swing.JMenuItem jMenuViewFullscreen

jMenuViewRefresh

javax.swing.JMenuItem jMenuViewRefresh

Class pl.krakow.cmuj.bioinformatics.jellipse.LnRvsVPlot extends Surface implements Serializable

Serialized Fields

chain

Peptide chain

Class pl.krakow.cmuj.bioinformatics.jellipse.PdbFetcher extends javax.swing.JFrame implements Serializable

Serialized Fields

pdbid

java.lang.String pdbid

pdbContent

java.lang.StringBuffer pdbContent

pdb

PdbFile pdb

pdbsize

int pdbsize

jButtonFtpPdbRetrieve

javax.swing.JButton jButtonFtpPdbRetrieve

jButtonPdbFileChoose

javax.swing.JButton jButtonPdbFileChoose

jFileChooserSelectPdb

javax.swing.JFileChooser jFileChooserSelectPdb

jLabel1

javax.swing.JLabel jLabel1

jLabelFtpPdbId

javax.swing.JLabel jLabelFtpPdbId

jPanelGetPdbViaFtp

javax.swing.JPanel jPanelGetPdbViaFtp

jPanelGetPdbViaLocal

javax.swing.JPanel jPanelGetPdbViaLocal

jTextFieldFtpPdbId

javax.swing.JTextField jTextFieldFtpPdbId

Class pl.krakow.cmuj.bioinformatics.jellipse.Quickinfo extends javax.swing.JFrame implements Serializable

Serialized Fields

jLabelUsage

javax.swing.JLabel jLabelUsage

Class pl.krakow.cmuj.bioinformatics.jellipse.RamachandranMap extends Surface implements Serializable

Serialized Fields

chain

Peptide chain

Class pl.krakow.cmuj.bioinformatics.jellipse.References extends javax.swing.JFrame implements Serializable

Serialized Fields

jLabelReferences

javax.swing.JLabel jLabelReferences

Class pl.krakow.cmuj.bioinformatics.jellipse.Surface extends javax.swing.JPanel implements Serializable

Serialized Fields

AntiAlias

java.lang.Object AntiAlias

Rendering

java.lang.Object Rendering

composite

java.awt.AlphaComposite composite

texture

java.awt.Paint texture

bimg

java.awt.image.BufferedImage bimg

imageType

int imageType

name

java.lang.String name

clearSurface

boolean clearSurface

dontThread

boolean dontThread

sleepAmount

long sleepAmount

orig

long orig

start

long start

frame

long frame

toolkit

java.awt.Toolkit toolkit

perfMonitor

boolean perfMonitor

outputPerf

boolean outputPerf

biw

int biw

bih

int bih

clearOnce

boolean clearOnce

toBeInitialized

boolean toBeInitialized

lut1Arr

byte[] lut1Arr

lut2Arr

byte[] lut2Arr

lut4Arr

byte[] lut4Arr