From Bioinformatics.Org Wiki
- ERGO - ERGO's microarray data submission module allows visualization of gene expression data in the context of ORFs and cellular pathways.
- MAExplorer - The Microarray Explorer (MAExplorer) is a Java-based data-mining facility for microarray databases run as a stand-alone program. It includes graphics, statistics, clustering, reports, data filtering.
- SEPON - SEPON designs gene-specific oligonucleotides for microarray experiments and is able to use EST input from organisms in which the genome is not annotated for genes. SEPON implements a novel algorithm for reducing cross-hybridization by utilizing thermodyna
- Teiresias-based Association Discovery - Discover associations in your data set (gene expression analysis, phenotype analysis, etc.)