From Bioinformatics.Org Wiki
- Artemis - a DNA sequence viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation.
- BioJava - The BioJava Project is an open-source project dedicated to providing Java tools for processing biological data.
- MAExplorer - The Microarray Explorer (MAExplorer) is a Java-based data-mining facility for microarray databases run as a stand-alone program. It includes graphics, statistics, clustering, reports, data filtering.