RNA

From Bioinformatics.Org Wiki

Ribonucleic acid

Software

• caRNAc - RNA secondary structure inference for set of homologous sequences
• caRNAsta - "Comparative Analysis of RNA structures by Tree Alignment"
• cove - an implementation of stochastic context free grammar methods for RNA sequence/structure analysis
• ModView - a program to visualize and analyze multiple biomolecule structures and/or sequence alignments
• NCRNASCAN - a structural RNA genefinder
• PHASE - performs molecular phylogenetic inference using maximum likelihood and Bayesian (MCMC) techniques
• PKNOTS - RNA pseudoknot prediction
• RNA GENiE - a web based program for the prediction of rna genes in genomic DNA sequences
• RNABOB - fast RNA motif/pattern searcher
• RnaViz - a user-friendly, portable, GUI program for producing publication-quality secondary structure drawings of RNA molecules
• tRNAscan-SE - tRNA detection in genome sequences, detects ~99% of eukaryotic nuclear or prokaryotic tRNA genes
• Vienna RNA Package - RNA secondary structure prediction and comparison

See also

• Nucleic acid
• RNA gene finder
• RNA motif
• RNA pseudoknots
• RNA secondary structure
• RNA folding
• tRNA
• rRNA
• mRNA
• DNA
• Central dogma