From Bioinformatics.Org Wiki
- autoseq - a small package of base calling software for ABI automated DNA sequencers
- consed - A Unix-based Graphical Editor and Automated Finishing Program for Phrap Sequence Assemblies
- phrap - a program for assembling shotgun DNA sequence data
- phred - Phred reads DNA sequencer trace data, calls bases, assigns quality values to the bases, and writes the base calls and quality values to output files.