December 20, 2019, at 02:39 AM
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- Galaxy workshop links
Link: https://www.bioinformatics.org/ftp/pub/mamed/gene_catalog.fasta.gz
Link: https://www.bioinformatics.org/ftp/pub/mamed/pfile1.fastq.gz
Link: https://www.bioinformatics.org/ftp/pub/mamed/pfile2.fastq.gz
Link: https://www.bioinformatics.org/ftp/pub/mamed/nucleotide.fasta
Link: https://www.bioinformatics.org/ftp/pub/mamed/protein.fasta
Link: https://www.bioinformatics.org/ftp/pub/mamed/gene_catalog.fasta
Link: https://www.bioinformatics.org/ftp/pub/mamed/pfile1.fastq
Link: https://www.bioinformatics.org/ftp/pub/mamed/pfile2.fastq
December 17, 2019, at 07:03 PM
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to:
Link: https://www.bioinformatics.org/ftp/pub/mamed/nucleotide.fasta
Link: https://www.bioinformatics.org/ftp/pub/mamed/protein.fasta
December 17, 2019, at 05:59 PM
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Link: https://www.bioinformatics.org/ftp/pub/mamed/gene_catalog.fasta.gz
Link: https://www.bioinformatics.org/ftp/pub/mamed/pfile1.fastq.gz
Link: https://www.bioinformatics.org/ftp/pub/mamed/pfile2.fastq.gz
December 16, 2019, at 04:38 AM
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Link: https://www.bioinformatics.org/ftp/pub/mamed/gene_catalog.fa
Link: https://www.bioinformatics.org/ftp/pub/mamed/pfile1.fq
Link: https://www.bioinformatics.org/ftp/pub/mamed/pfile2.fq
to:
Link: https://www.bioinformatics.org/ftp/pub/mamed/gene_catalog.fasta
Link: https://www.bioinformatics.org/ftp/pub/mamed/pfile1.fastq
Link: https://www.bioinformatics.org/ftp/pub/mamed/pfile2.fastq
December 15, 2019, at 06:02 AM
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December 15, 2019, at 06:02 AM
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- Galaxy workshop links
Link: https://www.bioinformatics.org/ftp/pub/mamed/gene_catalog.fa
Link: https://www.bioinformatics.org/ftp/pub/mamed/pfile1.fq
Link: https://www.bioinformatics.org/ftp/pub/mamed/pfile2.fq
October 10, 2019, at 03:56 PM
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These codes are being prepared and will be included in the link above after customization and appropriate help.
to:
Read the README.txt file for more information
October 10, 2019, at 03:54 PM
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Link: https://www.bioinformatics.org/ftp/pub/mamed
to:
- Download and unzip MetaGe.zip
Link: https://www.bioinformatics.org/ftp/pub/mamed/MetaGe.zip
October 09, 2019, at 05:32 AM
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'''These codes are being prepared and will be included in the link above after customization and appropriate help.
'''
to:
These codes are being prepared and will be included in the link above after customization and appropriate help.
October 09, 2019, at 05:30 AM
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These codes are being prepared and will be included in the link above after customization and appropriate help.
to:
'''These codes are being prepared and will be included in the link above after customization and appropriate help.
'''
October 09, 2019, at 05:30 AM
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- cd MAMED_metagenomic_data_analysis
- python2 mamed.py
The software and hardware requirements are contained in the MAMED-manual.pdf file.
Link:
https://www.bioinformatics.org/ftp/pub/mamed/MAMED-manual.pdf
Also, The Ubuntu virtual machine image for VirtualBox is available from the link below. MAMED is ready to run on the Ubuntu desktop. The root user password is '123456'. (file size: 7.2 GB)
Link:
https://www.bioinformatics.org/ftp/pub/mamed/MAMED_MG_Ubuntu.ova
to:
These codes are being prepared and will be included in the link above after customization and appropriate help.
October 09, 2019, at 05:27 AM
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- Download and unzip MAMED_metagenomic_data_analysis.zip
Link: https://www.bioinformatics.org/ftp/pub/mamed/MAMED_metagenomic_data_analysis.zip
to:
Link: https://www.bioinformatics.org/ftp/pub/mamed
October 09, 2019, at 05:26 AM
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This page contains the code for the paper:Beyond taxonomic analysis of microbiomes: A functional approach for revisiting microbiome changes in colorectal cancer
To run MAMED:
to:
This page contains the code for the paper: Beyond taxonomic analysis of microbiomes: A functional approach for revisiting microbiome changes in colorectal cancer
All the codes of this paper are located in the below FTP link:
October 09, 2019, at 05:22 AM
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Beyond taxonomic analysis of microbiomes: A functional approach for revisiting microbiome changes in colorectal cancer
to:
This page contains the code for the paper:Beyond taxonomic analysis of microbiomes: A functional approach for revisiting microbiome changes in colorectal cancer
October 09, 2019, at 05:16 AM
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MAMED: a pipeline for mapping-based analysis of metagenomic data
to:
Beyond taxonomic analysis of microbiomes: A functional approach for revisiting microbiome changes in colorectal cancer
August 20, 2019, at 11:54 AM
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To run MAMED
- Download and unzip MAMED_metagenomic_data_analysis.zip
to:
To run MAMED:
- Download and unzip MAMED_metagenomic_data_analysis.zip
Changed lines 9-14 from:
- cd MAMED_metagenomic_data_analysis
- python2 mamed.py
to:
- cd MAMED_metagenomic_data_analysis
- python2 mamed.py
August 20, 2019, at 11:53 AM
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August 20, 2019, at 11:53 AM
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August 20, 2019, at 11:52 AM
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Link: https://www.bioinformatics.org/ftp/pub/mamed/MAMED-manual.pdf
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Link:
https://www.bioinformatics.org/ftp/pub/mamed/MAMED-manual.pdf
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August 20, 2019, at 11:52 AM
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Link: https://www.bioinformatics.org/ftp/pub/mamed/MAMED-manual.pdf
to:
Link: https://www.bioinformatics.org/ftp/pub/mamed/MAMED-manual.pdf
Also, The Ubuntu virtual machine image for VirtualBox is available from the link below. MAMED is ready to run on the Ubuntu desktop. The root user password is '123456'. (file size: 7.2 GB)
https://www.bioinformatics.org/ftp/pub/mamed/MAMED_MG_Ubuntu.ova
August 17, 2019, at 03:22 AM
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August 17, 2019, at 02:56 AM
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August 17, 2019, at 02:55 AM
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MAMED: a pipeline for mapping-based analysis of metagenomic data
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MAMED: a pipeline for mapping-based analysis of metagenomic data
August 17, 2019, at 02:55 AM
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August 17, 2019, at 02:54 AM
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to:
To run MAMED
- Download and unzip MAMED_metagenomic_data_analysis.zip
Link: https://www.bioinformatics.org/ftp/pub/mamed/MAMED_metagenomic_data_analysis.zip
- cd MAMED_metagenomic_data_analysis
- python2 mamed.py
The software and hardware requirements are contained in the MAMED-manual.pdf file.
Link: https://www.bioinformatics.org/ftp/pub/mamed/MAMED-manual.pdf
August 16, 2019, at 08:29 AM
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https://www.bioinformatics.org/ftp/pub/MAMED: a pipeline for mapping-based analysis of metagenomic data
to:
MAMED: a pipeline for mapping-based analysis of metagenomic data
August 16, 2019, at 06:15 AM
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[[Page link?]]MAMED: a pipeline for mapping-based analysis of metagenomic data
to:
https://www.bioinformatics.org/ftp/pub/MAMED: a pipeline for mapping-based analysis of metagenomic data
August 16, 2019, at 06:09 AM
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MAMED: a pipeline for mapping-based analysis of metagenomic data
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August 16, 2019, at 06:04 AM
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MAMED: a pipeline for mapping-based analysis of metagenomic data