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January 06, 2009, at 01:55 PM by 75.143.68.139 -
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All programs have been tested in LINUX and cygwin(simulated Linux in Windows) environments.

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All programs have been tested in LINUX and cygwin(emulated Linux in Windows) environments.

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October 08, 2008, at 04:43 PM by 75.143.68.139 -
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There are {$TotalCount} visits since Oct 6, 2008.

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September 09, 2008, at 08:06 PM by 75.143.68.139 -
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  PNAS, 2003, 100(22):12820-4 
  PDF
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  PNAS, 2003, 100(22):12820-4  PDF
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September 09, 2008, at 08:06 PM by 75.143.68.139 -
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  http://www.pnas.org/cgi/content/full/100/22/12820
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3)Qin H, Yang Li, Detection of Changes in Transitive Associations by Shortest-path Analysis of Protein Interaction Networks Integrated with Gene Expression Profiles. BMEI (1) 2008, 418-423. pdf

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3)Qin H, Yang Li, Detection of Changes in Transitive Associations by Shortest-path Analysis of Protein Interaction Networks Integrated with Gene Expression Profiles. BMEI (1) 2008, 418-423. PDF

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September 09, 2008, at 08:05 PM by 75.143.68.139 -
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3)Qin H, Yang Li, Detection of Changes in Transitive Associations by Shortest-path Analysis of Protein Interaction Networks Integrated with Gene Expression Profiles. BMEI (1) 2008, 418-423. pdf

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March 24, 2006, at 10:48 PM by 128.151.242.80 -
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This program generate a MS02 network null model.

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This program generate a MS02 network null model in pair-wise format.

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March 23, 2006, at 02:42 PM by 128.151.242.80 -
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This software package contains some C++ and PERL programs that are useful for studying biological networks, especially protein interaction networks and gene coexpression networks.

Program 'dk':
This program calculate the shortest-path for all pairwise combinations within a input list of proteins. The network is input in pairwise format. This network is unweighted and undirected. The outputs are the shortest-path distance matrix, the number of shortes-path in a distance matrix, and a detail file that contains all the shortest-path for all the combinations.

Program 'wdk':
This program calculate the shortest-path distance for a weighted, undirected network. It outputs a distance matrix and the shortest-paths.

Program 'ms02':
This program generate a MS02 network null model.

All programs have been tested in LINUX and cygwin(simulated Linux in Windows) environments.

Reference:
1)Qin H, Lu HH, Wu WB, Li WH. Evolution of the yeast protein interaction network. 

  PNAS, 2003, 100(22):12820-4 
  http://www.pnas.org/cgi/content/full/100/22/12820

2)Maslov S, Sneppen K. Specificity and stability in topology of protein networks. 

  Science. 2002, 296(5569):910-3.
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