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Main.AboutBNA History
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January 06, 2009, at 01:55 PM
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All programs have been tested in LINUX and [[cygwin]](simulated Linux in Windows) environments.
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All programs have been tested in LINUX and [[cygwin]](emulated Linux in Windows) environments.
October 08, 2008, at 04:43 PM
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There are '''{$TotalCount}''' visits since Oct 6, 2008.
September 09, 2008, at 08:06 PM
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PNAS, 2003, 100(22):12820-4
[[http://www.pnas.org/cgi/content/full/100/22/12820| PDF ]]
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PNAS, 2003, 100(22):12820-4 [[http://www.pnas.org/cgi/content/full/100/22/12820| PDF ]]
September 09, 2008, at 08:06 PM
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[[http://www.pnas.org/cgi/content/full/100/22/12820]]
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[[http://www.pnas.org/cgi/content/full/100/22/12820| PDF ]]
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3)Qin H, Yang Li, Detection of Changes in Transitive Associations by Shortest-path Analysis of Protein Interaction Networks Integrated with Gene Expression Profiles. BMEI (1) 2008, 418-423. [[http://doi.ieeecomputersociety.org/10.1109/BMEI.2008.157 | pdf]]
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3)Qin H, Yang Li, Detection of Changes in Transitive Associations by Shortest-path Analysis of Protein Interaction Networks Integrated with Gene Expression Profiles. BMEI (1) 2008, 418-423. [[http://doi.ieeecomputersociety.org/10.1109/BMEI.2008.157 | PDF ]]
September 09, 2008, at 08:05 PM
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3)Qin H, Yang Li, Detection of Changes in Transitive Associations by Shortest-path Analysis of Protein Interaction Networks Integrated with Gene Expression Profiles. BMEI (1) 2008, 418-423. [[http://doi.ieeecomputersociety.org/10.1109/BMEI.2008.157 | pdf]]
March 24, 2006, at 10:48 PM
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This program generate a MS02 network null model.
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This program generate a MS02 network null model in pair-wise format.
March 23, 2006, at 02:42 PM
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This software package contains some C++ and PERL programs that are useful for studying biological networks, especially protein interaction networks and gene coexpression networks.
Program 'dk': \\
This program calculate the shortest-path for all pairwise combinations within a input list of proteins. The network is input in pairwise format. This network is unweighted and undirected. The outputs are the shortest-path distance matrix, the number of shortes-path in a distance matrix, and a detail file that contains all the shortest-path for all the combinations.
Program 'wdk':\\
This program calculate the shortest-path distance for a weighted, undirected network. It outputs a distance matrix and the shortest-paths.
Program 'ms02': \\
This program generate a MS02 network null model.
All programs have been tested in LINUX and [[cygwin]](simulated Linux in Windows) environments.
Reference: \\
1)Qin H, Lu HH, Wu WB, Li WH. Evolution of the yeast protein interaction network.
PNAS, 2003, 100(22):12820-4
[[http://www.pnas.org/cgi/content/full/100/22/12820]]
2)Maslov S, Sneppen K. Specificity and stability in topology of protein networks.
Science. 2002, 296(5569):910-3.
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