Computational Thinking in Life Sciences : Data

February 03, 2010, at 09:05 PM by 71.204.26.28 -

Changed lines 28-29 from:

Files for KaKs and growth fitness analysis in yeast protein interaction network

to:

Files for KaKs and growth fitness analysis in yeast protein interaction network

February 03, 2010, at 08:56 PM by 71.204.26.28 -

Changed lines 28-29 from:

Files for KaKs and fitness analysis in yeast protein interaction network

to:

Files for KaKs and growth fitness analysis in yeast protein interaction network

February 03, 2010, at 08:55 PM by 71.204.26.28 -

Added lines 28-29:

Files for KaKs and fitness analysis in yeast protein interaction network

February 03, 2010, at 08:54 PM by 71.204.26.28 -

Changed lines 26-27 from:

Yeast growth fitness of deletion mutantsCSV format

to:

Yeast growth fitness of deletion mutants CSV format

February 03, 2010, at 08:53 PM by 71.204.26.28 -

Changed lines 24-26 from:

Yeast protein interaction pairs: CSV format

to:

Yeast protein interaction pairs: CSV format Delimited format
Yeast growth fitness of deletion mutantsCSV format

February 01, 2010, at 04:44 PM by 12.13.176.132 -

Deleted line 17:

Deleted line 19:

Added lines 24-26:

Yeast protein interaction pairs: CSV format

Deleted line 30:

February 01, 2010, at 11:09 AM by 12.13.176.132 -

Changed lines 24-25 from:

Yeast life span table (Qin & Lu, 2006 Exp Genrotology): CSV format

to:

Yeast life span table (Qin & Lu, 2006 Exp Genrotology): CSV format

January 27, 2010, at 08:42 PM by 12.13.176.132 -

Changed lines 22-23 from:

Yeast gene table (Status, ORF, Chromosome);

to:

Yeast gene table in tab-delimited format (Status, ORF, Chromosome);

January 27, 2010, at 08:41 PM by 12.13.176.132 -

Added lines 21-23:

Yeast gene table (Status, ORF, Chromosome);

January 25, 2010, at 06:18 PM by 12.13.176.132 -

Changed lines 25-27 from:

PDB data

to:

PDB data

January 25, 2010, at 06:18 PM by 12.13.176.132 -

Changed lines 25-27 from:

to:

PDB data

Changed lines 37-38 from:

PDB data

to:

January 20, 2010, at 10:40 PM by 71.204.26.28 -

Changed lines 23-25 from:

Ka Ks among yeasts, Kellis 03

to:

Comparative genomics yeasts, Kellis 03, including Ka Ks pairwise comparison

January 20, 2010, at 10:40 PM by 71.204.26.28 -

Changed lines 23-25 from:

to:

Ka Ks among yeasts, Kellis 03

January 20, 2010, at 07:36 PM by 12.13.176.132 -

Added lines 21-23:

Yeast life span table (Qin & Lu, 2006 Exp Genrotology): CSV format

July 23, 2009, at 09:03 AM by 69.136.55.73 -

Added lines 28-29:

Bionumbers

June 25, 2009, at 06:59 PM by 69.136.55.73 -

Added lines 18-20:

Proteins with LCRs

Deleted lines 27-28:

Proteins with LCRs

June 14, 2009, at 12:32 PM by 69.136.55.73 -

Changed line 30 from:

coat

to:

coat

June 13, 2009, at 09:37 AM by 69.136.55.73 -

Changed lines 29-30 from:

to:

coat

May 28, 2009, at 12:22 AM by 75.143.68.139 -

Added lines 12-13:

HIV gag (including Libya HIV isolates)

May 12, 2009, at 05:16 PM by 192.203.127.3 -

Added lines 17-18:

data by Campbell & Heyer

February 07, 2009, at 12:52 AM by 76.123.113.149 -

Changed lines 5-6 from:

Giant panda and bear's 16s mitochondrial rDNA FASTA; Who is giant panda's closest living relative?

to:

Giant panda and bear's 16s mitochondrial rDNA FASTA; TEXT;

     Who is giant panda's closest living relative?

February 07, 2009, at 12:47 AM by 76.123.113.149 -

Added line 2:

January 14, 2009, at 02:35 PM by 192.203.127.3 -

Changed lines 12-13 from:

Carlson yeast growth data (from Bioquest)

to:

Carlson yeast growth data (from Bioquest): EXCEL format; CSV format

January 14, 2009, at 02:31 PM by 192.203.127.3 -

Changed lines 10-13 from:

SIR2 protein in the budding yeast (Genbank accession number NP_010242).

FASTA Genbank entry

to:

SIR2 protein in the budding yeast (Genbank accession number NP_010242). FASTA Genbank entry

January 14, 2009, at 02:31 PM by 192.203.127.3 -

Changed lines 1-17 from:

MEGA examples
Bacterial 16s rDNA FASTA; Text;

What are outgroups?

Giant panda and bear's 16s mitochondrial rDNA FASTA;

Who is giant panda's closest living relative?

Ref: O'Brien SJ, Nash WG, Wildt DE, Bush ME, Benveniste RE.

A molecular solution to the riddle of the giant panda's phylogeny.

Nature. 1985 Sep 12-18;317(6033):140-4.

SIR2 protein in the budding yeast (Genbank accession number NP_010242).

FASTA

Genbank entry

Carlson yeast growth data (from Bioquest)

to:

MEGA examples
Bacterial 16s rDNA FASTA; Text; What are outgroups?
Giant panda and bear's 16s mitochondrial rDNA FASTA; Who is giant panda's closest living relative?

     Ref: 
     O'Brien SJ, Nash WG, Wildt DE, Bush ME, Benveniste RE. 
     A molecular solution to the riddle of the giant panda's phylogeny. 
     Nature. 1985 Sep 12-18;317(6033):140-4.

SIR2 protein in the budding yeast (Genbank accession number NP_010242).

FASTA Genbank entry

Carlson yeast growth data (from Bioquest)

January 14, 2009, at 02:28 PM by 192.203.127.3 -

Changed lines 1-3 from:

MEGA examples
Bacterial 16s rDNA FASTA; Text;

to:

MEGA examples
Bacterial 16s rDNA FASTA; Text;

Changed line 6 from:

Giant panda and bear's 16s mitochondrial rDNA FASTA;

to:

Giant panda and bear's 16s mitochondrial rDNA FASTA;

Changed line 12 from:

SIR2 protein in the budding yeast (Genbank accession number NP_010242).

to:

SIR2 protein in the budding yeast (Genbank accession number NP_010242).

Changed lines 16-26 from:

Carlson yeast growth data (from Bioquest)
Bioquest number data
Proteins with LCRs
PDB data
Geospiza data

to:

Carlson yeast growth data (from Bioquest)

Geospiza data
Bioquest number data
Proteins with LCRs
PDB data

January 14, 2009, at 02:26 PM by 192.203.127.3 -

Deleted line 11:

Added lines 16-18:

Carlson yeast growth data (from Bioquest)

January 09, 2009, at 10:11 AM by 170.140.56.99 -

Added lines 17-18:

Bioquest number data

November 17, 2008, at 11:45 AM by 74.254.146.120 -

Changed line 14 from:

->FASTA

to:

FASTA

November 17, 2008, at 11:44 AM by 74.254.146.120 -

Changed lines 14-16 from:

FASTA

Genbank entry

to:

->FASTA

Genbank entry

November 17, 2008, at 11:44 AM by 74.254.146.120 -

Changed lines 14-15 from:

Hanging indent

FASTA

to:

FASTA

November 17, 2008, at 11:44 AM by 74.254.146.120 -

Changed lines 14-16 from:

FASTA

Genbank entry

to:

Hanging indent

FASTA

Genbank entry

November 17, 2008, at 11:43 AM by 74.254.146.120 -

Changed line 13 from:

SIR2 protein in the budding yeast.

to:

SIR2 protein in the budding yeast (Genbank accession number NP_010242).

Changed lines 15-16 from:

Genbank accession number NP_010242

to:

Genbank entry

November 17, 2008, at 11:41 AM by 74.254.146.120 -

Changed lines 13-14 from:

SIR2 protein in the budding yeast. FASTA Genbank accession number NP_010242

to:

SIR2 protein in the budding yeast.

FASTA

Genbank accession number NP_010242

November 17, 2008, at 11:40 AM by 74.254.146.120 -

Changed lines 13-14 from:

SIR2 protein in the budding yeast. Genbank accession number NP_010242

to:

SIR2 protein in the budding yeast. FASTA Genbank accession number NP_010242

November 17, 2008, at 11:39 AM by 74.254.146.120 -

Changed lines 13-14 from:

SIR2 gene in the budding yeast. protein

to:

SIR2 protein in the budding yeast. Genbank accession number NP_010242

November 03, 2008, at 03:45 PM by 75.143.68.139 -

Changed lines 13-14 from:

SIR2 gene in the budding yeast. DNA coding regions ? protein

to:

SIR2 gene in the budding yeast. protein

November 03, 2008, at 03:43 PM by 75.143.68.139 -

Added lines 13-14:

SIR2 gene in the budding yeast. DNA coding regions ? protein

October 30, 2008, at 05:14 PM by 192.203.127.3 -

Changed lines 9-12 from:

->A molecular solution to the riddle of the giant panda's phylogeny.

->Nature. 1985 Sep 12-18;317(6033):140-4.

to:

A molecular solution to the riddle of the giant panda's phylogeny.

Nature. 1985 Sep 12-18;317(6033):140-4.

October 30, 2008, at 05:13 PM by 192.203.127.3 -

Changed lines 9-12 from:

A molecular solution to the riddle of the giant panda's phylogeny.

Nature. 1985 Sep 12-18;317(6033):140-4.

to:

->A molecular solution to the riddle of the giant panda's phylogeny.

->Nature. 1985 Sep 12-18;317(6033):140-4.

October 30, 2008, at 05:13 PM by 192.203.127.3 -

Changed lines 8-12 from:

 Ref: O'Brien SJ, Nash WG, Wildt DE, Bush ME, Benveniste RE.

A molecular solution to the riddle of the giant panda's phylogeny. Nature. 1985 Sep 12-18;317(6033):140-4.

to:

Ref: O'Brien SJ, Nash WG, Wildt DE, Bush ME, Benveniste RE.

A molecular solution to the riddle of the giant panda's phylogeny.

Nature. 1985 Sep 12-18;317(6033):140-4.

October 30, 2008, at 05:13 PM by 192.203.127.3 -

Changed lines 8-10 from:

 Ref: O'Brien SJ, Nash WG, Wildt DE, Bush ME, Benveniste RE. A molecular solution to the riddle of the giant panda's phylogeny. Nature. 1985 Sep 12-18;317(6033):140-4.

to:

 Ref: O'Brien SJ, Nash WG, Wildt DE, Bush ME, Benveniste RE.

A molecular solution to the riddle of the giant panda's phylogeny. Nature. 1985 Sep 12-18;317(6033):140-4.

October 30, 2008, at 05:12 PM by 192.203.127.3 -

Changed lines 8-10 from:

to:

 Ref: O'Brien SJ, Nash WG, Wildt DE, Bush ME, Benveniste RE. A molecular solution to the riddle of the giant panda's phylogeny. Nature. 1985 Sep 12-18;317(6033):140-4.

October 29, 2008, at 09:07 PM by 75.143.68.139 -

Changed lines 3-8 from:

Bacterial 16s rDNA FASTA; Text; What are outgroups?
Giant panda and bear's 16s mitochondrial rDNA FASTA; Who is giant panda's closest living relative?

to:

Bacterial 16s rDNA FASTA; Text;

What are outgroups?

Giant panda and bear's 16s mitochondrial rDNA FASTA;

Who is giant panda's closest living relative?

October 29, 2008, at 09:06 PM by 75.143.68.139 -

Changed lines 3-8 from:

Bacterial 16s rDNA FASTA; Text;
Panda and bear's 16s mitochondrial rDNA FASTA;

to:

Bacterial 16s rDNA FASTA; Text; What are outgroups?
Giant panda and bear's 16s mitochondrial rDNA FASTA; Who is giant panda's closest living relative?

October 29, 2008, at 09:06 PM by 75.143.68.139 -

Changed lines 3-4 from:

Bacterial 16s rDNA FASTA; Text

to:

Bacterial 16s rDNA FASTA; Text;

October 29, 2008, at 09:05 PM by 75.143.68.139 -

Changed lines 3-6 from:

16s rDNA FASTA; Text

to:

Bacterial 16s rDNA FASTA; Text
Panda and bear's 16s mitochondrial rDNA FASTA;

October 29, 2008, at 08:29 PM by 75.143.68.139 -

Changed lines 4-7 from:

These sequences are aligned based on 16s rRNA structures in RDP

to:

October 29, 2008, at 08:08 PM by 75.143.68.139 -

Changed lines 3-4 from:

16s rDNA FASTA; Text

to:

16s rDNA FASTA; Text
These sequences are aligned based on 16s rRNA structures in RDP

October 29, 2008, at 08:06 PM by 75.143.68.139 -

Changed lines 3-4 from:

16s rDNA FASTAText

to:

16s rDNA FASTA; Text

October 29, 2008, at 08:06 PM by 75.143.68.139 -

Changed lines 3-5 from:

16s rDNA ?

to:

16s rDNA FASTAText

October 27, 2008, at 09:36 PM by 75.143.68.139 -

Changed lines 1-4 from:

16s rDNA
MEGA examples

to:

MEGA examples
16s rDNA ?

October 27, 2008, at 09:34 PM by 75.143.68.139 -

Added lines 3-4:

MEGA examples

September 22, 2008, at 08:54 PM by 75.143.68.139 -

Changed line 2 from:

PDB data

to:

Added lines 4-6:

PDB data

Added line 8:

September 22, 2008, at 08:47 PM by 75.143.68.139 -

Changed line 3 from:

to:

Proteins with LCRs

September 16, 2008, at 04:46 PM by 192.203.127.3 -

Added lines 3-4:

Geospiza data

September 01, 2008, at 11:14 PM by 75.143.68.139 -

Added lines 1-2:

16s rDNA
PDB data

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