Computational Thinking in Life Sciences : Data

February 03, 2010, at 09:05 PM by 71.204.26.28 -

Changed lines 28-29 from:

* [[ http://bioinformatics.org/ctls/download/data/PIN.KaKs.tar.gz | Files for KaKs and growth fitness analysis in yeast protein interaction network]]

to:

* [[ http://bioinformatics.org/ctls/download/data/PIN.KaKs.zip | Files for KaKs and growth fitness analysis in yeast protein interaction network]]

February 03, 2010, at 08:56 PM by 71.204.26.28 -

Changed lines 28-29 from:

* [[ http://bioinformatics.org/ctls/download/data/PIN.KaKs.tar.gz | Files for KaKs and fitness analysis in yeast protein interaction network]]

to:

* [[ http://bioinformatics.org/ctls/download/data/PIN.KaKs.tar.gz | Files for KaKs and growth fitness analysis in yeast protein interaction network]]

February 03, 2010, at 08:55 PM by 71.204.26.28 -

Added lines 28-29:

* [[ http://bioinformatics.org/ctls/download/data/PIN.KaKs.tar.gz | Files for KaKs and fitness analysis in yeast protein interaction network]]

February 03, 2010, at 08:54 PM by 71.204.26.28 -

Changed lines 26-27 from:

* Yeast growth fitness of deletion mutants[[ http://bioinformatics.org/ctls/download/data/growth.fitness.hom.csv | CSV format]]

to:

* Yeast growth fitness of deletion mutants [[ http://bioinformatics.org/ctls/download/data/growth.fitness.hom.csv | CSV format]]

February 03, 2010, at 08:53 PM by 71.204.26.28 -

Changed lines 24-26 from:

* Yeast protein interaction pairs: [[ http://bioinformatics.org/ctls/download/data/pairs.csv| CSV format]]

to:

* Yeast protein interaction pairs: [[ http://bioinformatics.org/ctls/download/data/pairs.csv| CSV format]] [[ http://bioinformatics.org/ctls/download/data/pairs.tab| Delimited format]]

* Yeast growth fitness of deletion mutants[[ http://bioinformatics.org/ctls/download/data/growth.fitness.hom.csv | CSV format]]

February 01, 2010, at 04:44 PM by 12.13.176.132 -

Deleted line 17:

Deleted line 19:

Added lines 24-26:

* Yeast protein interaction pairs: [[ http://bioinformatics.org/ctls/download/data/pairs.csv| CSV format]]

Deleted line 30:

February 01, 2010, at 11:09 AM by 12.13.176.132 -

Changed lines 24-25 from:

* Yeast life span table (Qin & Lu, 2006 Exp Genrotology): [[ http://bioinformatics.org/ctls/download/data/nat.rls.csv.zip| CSV format ]]

to:

* Yeast life span table (Qin & Lu, 2006 Exp Genrotology): [[ http://bioinformatics.org/ctls/download/data/nat-rls.csv| CSV format ]]

January 27, 2010, at 08:42 PM by 12.13.176.132 -

Changed lines 22-23 from:

* [[http://bioinformatics.org/ctls/download/data/my.sgd.orf.csv | Yeast gene table (Status, ORF, Chromosome)]];

to:

* [[http://bioinformatics.org/ctls/download/data/my.sgd.orf.csv | Yeast gene table in tab-delimited format (Status, ORF, Chromosome)]];

January 27, 2010, at 08:41 PM by 12.13.176.132 -

Added lines 21-23:

* [[http://bioinformatics.org/ctls/download/data/my.sgd.orf.csv | Yeast gene table (Status, ORF, Chromosome)]];

January 25, 2010, at 06:18 PM by 12.13.176.132 -

Changed lines 25-27 from:

# [[PDB data]]

to:

* [[PDB data]]

January 25, 2010, at 06:18 PM by 12.13.176.132 -

Changed lines 25-27 from:

to:

# [[PDB data]]

Changed lines 37-38 from:

# [[PDB data]]

to:

January 20, 2010, at 10:40 PM by 71.204.26.28 -

Changed lines 23-25 from:

* [[http://www.broadinstitute.org/annotation/fungi/comp_yeasts/downloads.html | Ka Ks among yeasts, Kellis 03]]

to:

* [[http://www.broadinstitute.org/annotation/fungi/comp_yeasts/downloads.html | Comparative genomics yeasts, Kellis 03, including Ka Ks pairwise comparison]]

January 20, 2010, at 10:40 PM by 71.204.26.28 -

Changed lines 23-25 from:

to:

* [[http://www.broadinstitute.org/annotation/fungi/comp_yeasts/downloads.html | Ka Ks among yeasts, Kellis 03]]

January 20, 2010, at 07:36 PM by 12.13.176.132 -

Added lines 21-23:

* Yeast life span table (Qin & Lu, 2006 Exp Genrotology): [[ http://bioinformatics.org/ctls/download/data/nat.rls.csv.zip| CSV format ]]

July 23, 2009, at 09:03 AM by 69.136.55.73 -

Added lines 28-29:

# [[http://bionumbers.hms.harvard.edu/default.aspx | Bionumbers ]]

June 25, 2009, at 06:59 PM by 69.136.55.73 -

Added lines 18-20:

* [[Proteins with LCRs]]

Deleted lines 27-28:

# [[Proteins with LCRs]]

June 14, 2009, at 12:32 PM by 69.136.55.73 -

Changed line 30 from:

* [[http://bioinformatics.org/ctls/coat.tar.gz | coat]]

to:

* [[http://bioinformatics.org/ctls/download/coat.tar.gz | coat]]

June 13, 2009, at 09:37 AM by 69.136.55.73 -

Changed lines 29-30 from:

to:

---------
* [[http://bioinformatics.org/ctls/coat.tar.gz | coat]]

May 28, 2009, at 12:22 AM by 75.143.68.139 -

Added lines 12-13:

* [[ http://bioinformatics.org/ctls/download/cases/gag.fas | HIV gag]] (including Libya HIV isolates)

May 12, 2009, at 05:16 PM by 192.203.127.3 -

Added lines 17-18:

# [[http://wps.aw.com/bc_campbell_genomics_2/43/11232/2875502.cw/index.html | data by Campbell & Heyer]]

February 07, 2009, at 12:52 AM by 76.123.113.149 -

Changed lines 5-6 from:

* Giant panda and bear's 16s mitochondrial rDNA [[http://bioinformatics.org/ctls/download/data/panda16srDNA.fasta | FASTA]]; Who is giant panda's closest living relative?

to:

* Giant panda and bear's 16s mitochondrial rDNA [[http://bioinformatics.org/ctls/download/data/panda16srDNA.fasta | FASTA]]; [[TEXT]];
Who is giant panda's closest living relative?

February 07, 2009, at 12:47 AM by 76.123.113.149 -

Added line 2:

January 14, 2009, at 02:35 PM by 192.203.127.3 -

Changed lines 12-13 from:

* [[ http://bioinformatics.org/ctls/download/data/Carlson_Yeast.xls| Carlson yeast growth data (from Bioquest)]]

to:

* Carlson yeast growth data (from Bioquest): [[ http://bioinformatics.org/ctls/download/data/Carlson_Yeast.xls| EXCEL format]]; [[ http://bioinformatics.org/ctls/download/data/Carlson_Yeast.csv| CSV format ]]

January 14, 2009, at 02:31 PM by 192.203.127.3 -

Changed lines 10-13 from:

* SIR2 protein in the budding yeast (Genbank accession number NP_010242).
[[FASTA]]
[[ http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?WebEnv=1Dwr-mPlLeaZLF8Y0uque2FCSYxZgBIY-cPukTgY79493jFL77lBj3UsOe3u67E6cK4I69xZ9DXdPrL7T9GKPGl5R%40D44A7C4967AD5840_0131SID&db=protein&qty=1&c_start=1&list_uids=6320163&uids=&dopt=fasta&dispmax=5&sendto=&from=begin&to=end&extrafeatpresent=1&ef_MGC=16&ef_HPRD=32&ef_STS=64&ef_tRNA=128&ef_microRNA=256&ef_Exon=512 | Genbank entry]]

to:

* SIR2 protein in the budding yeast (Genbank accession number NP_010242). [[FASTA]] [[ http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?WebEnv=1Dwr-mPlLeaZLF8Y0uque2FCSYxZgBIY-cPukTgY79493jFL77lBj3UsOe3u67E6cK4I69xZ9DXdPrL7T9GKPGl5R%40D44A7C4967AD5840_0131SID&db=protein&qty=1&c_start=1&list_uids=6320163&uids=&dopt=fasta&dispmax=5&sendto=&from=begin&to=end&extrafeatpresent=1&ef_MGC=16&ef_HPRD=32&ef_STS=64&ef_tRNA=128&ef_microRNA=256&ef_Exon=512 | Genbank entry]]

January 14, 2009, at 02:31 PM by 192.203.127.3 -

Changed lines 1-17 from:

# [[http://bioinformatics.org/ctls/download/MEGAExamples.zip | MEGA examples]]

# Bacterial 16s rDNA [[http://bioinformatics.org/ctls/download/data/16srDNA.fasta | FASTA]]; [[http://bioinformatics.org/ctls/download/data/16srDNA.txt | Text]];
->What are outgroups?

# Giant panda and bear's 16s mitochondrial rDNA [[http://bioinformatics.org/ctls/download/data/panda16srDNA.fasta | FASTA]];
->Who is giant panda's closest living relative?
->Ref: O'Brien SJ, Nash WG, Wildt DE, Bush ME, Benveniste RE.
-> A molecular solution to the riddle of the giant panda's phylogeny.
-> Nature. 1985 Sep 12-18;317(6033):140-4.

# SIR2 protein in the budding yeast (Genbank accession number NP_010242).
->[[FASTA]]
->[[ http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?WebEnv=1Dwr-mPlLeaZLF8Y0uque2FCSYxZgBIY-cPukTgY79493jFL77lBj3UsOe3u67E6cK4I69xZ9DXdPrL7T9GKPGl5R%40D44A7C4967AD5840_0131SID&db=protein&qty=1&c_start=1&list_uids=6320163&uids=&dopt=fasta&dispmax=5&sendto=&from=begin&to=end&extrafeatpresent=1&ef_MGC=16&ef_HPRD=32&ef_STS=64&ef_tRNA=128&ef_microRNA=256&ef_Exon=512 | Genbank entry]]

# [[ http://bioinformatics.org/ctls/download/data/Carlson_Yeast.xls| Carlson yeast growth data (from Bioquest)]]

to:

* [[http://bioinformatics.org/ctls/download/MEGAExamples.zip | MEGA examples]]
* Bacterial 16s rDNA [[http://bioinformatics.org/ctls/download/data/16srDNA.fasta | FASTA]]; [[http://bioinformatics.org/ctls/download/data/16srDNA.txt | Text]]; What are outgroups?

* Giant panda and bear's 16s mitochondrial rDNA [[http://bioinformatics.org/ctls/download/data/panda16srDNA.fasta | FASTA]]; Who is giant panda's closest living relative?
Ref:
O'Brien SJ, Nash WG, Wildt DE, Bush ME, Benveniste RE.
A molecular solution to the riddle of the giant panda's phylogeny.
Nature. 1985 Sep 12-18;317(6033):140-4.

* SIR2 protein in the budding yeast (Genbank accession number NP_010242).
[[FASTA]]
[[ http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?WebEnv=1Dwr-mPlLeaZLF8Y0uque2FCSYxZgBIY-cPukTgY79493jFL77lBj3UsOe3u67E6cK4I69xZ9DXdPrL7T9GKPGl5R%40D44A7C4967AD5840_0131SID&db=protein&qty=1&c_start=1&list_uids=6320163&uids=&dopt=fasta&dispmax=5&sendto=&from=begin&to=end&extrafeatpresent=1&ef_MGC=16&ef_HPRD=32&ef_STS=64&ef_tRNA=128&ef_microRNA=256&ef_Exon=512 | Genbank entry]]

* [[ http://bioinformatics.org/ctls/download/data/Carlson_Yeast.xls| Carlson yeast growth data (from Bioquest)]]

January 14, 2009, at 02:28 PM by 192.203.127.3 -

Changed lines 1-3 from:

* [[http://bioinformatics.org/ctls/download/MEGAExamples.zip | MEGA examples]]

* Bacterial 16s rDNA [[http://bioinformatics.org/ctls/download/data/16srDNA.fasta | FASTA]]; [[http://bioinformatics.org/ctls/download/data/16srDNA.txt | Text]];

to:

# [[http://bioinformatics.org/ctls/download/MEGAExamples.zip | MEGA examples]]

# Bacterial 16s rDNA [[http://bioinformatics.org/ctls/download/data/16srDNA.fasta | FASTA]]; [[http://bioinformatics.org/ctls/download/data/16srDNA.txt | Text]];

Changed line 6 from:

* Giant panda and bear's 16s mitochondrial rDNA [[http://bioinformatics.org/ctls/download/data/panda16srDNA.fasta | FASTA]];

to:

# Giant panda and bear's 16s mitochondrial rDNA [[http://bioinformatics.org/ctls/download/data/panda16srDNA.fasta | FASTA]];

Changed line 12 from:

* SIR2 protein in the budding yeast (Genbank accession number NP_010242).

to:

# SIR2 protein in the budding yeast (Genbank accession number NP_010242).

Changed lines 16-26 from:

* [[ http://bioinformatics.org/ctls/download/data/Carlson_Yeast.xls| Carlson yeast growth data (from Bioquest)]]

* [[http://www.bioquest.org/NumbersCount/data.php | Bioquest number data ]]

* [[Proteins with LCRs]]

* [[PDB data]]

* [[http://www.geospiza.com/education/materials.html#data | Geospiza data ]]

to:

# [[ http://bioinformatics.org/ctls/download/data/Carlson_Yeast.xls| Carlson yeast growth data (from Bioquest)]]

----
# [[http://www.geospiza.com/education/materials.html#data | Geospiza data ]]

# [[http://www.bioquest.org/NumbersCount/data.php | Bioquest number data ]]

# [[Proteins with LCRs]]

# [[PDB data]]

January 14, 2009, at 02:26 PM by 192.203.127.3 -

Deleted line 11:

Added lines 16-18:

* [[ http://bioinformatics.org/ctls/download/data/Carlson_Yeast.xls| Carlson yeast growth data (from Bioquest)]]

January 09, 2009, at 10:11 AM by 170.140.56.99 -

Added lines 17-18:

* [[http://www.bioquest.org/NumbersCount/data.php | Bioquest number data ]]

November 17, 2008, at 11:45 AM by 74.254.146.120 -

Changed line 14 from:

->->[[FASTA]]

to:

->[[FASTA]]

November 17, 2008, at 11:44 AM by 74.254.146.120 -

Changed lines 14-16 from:

-<[[FASTA]]
-<[[ http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?WebEnv=1Dwr-mPlLeaZLF8Y0uque2FCSYxZgBIY-cPukTgY79493jFL77lBj3UsOe3u67E6cK4I69xZ9DXdPrL7T9GKPGl5R%40D44A7C4967AD5840_0131SID&db=protein&qty=1&c_start=1&list_uids=6320163&uids=&dopt=fasta&dispmax=5&sendto=&from=begin&to=end&extrafeatpresent=1&ef_MGC=16&ef_HPRD=32&ef_STS=64&ef_tRNA=128&ef_microRNA=256&ef_Exon=512 | Genbank entry]]

to:

->->[[FASTA]]
->[[ http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?WebEnv=1Dwr-mPlLeaZLF8Y0uque2FCSYxZgBIY-cPukTgY79493jFL77lBj3UsOe3u67E6cK4I69xZ9DXdPrL7T9GKPGl5R%40D44A7C4967AD5840_0131SID&db=protein&qty=1&c_start=1&list_uids=6320163&uids=&dopt=fasta&dispmax=5&sendto=&from=begin&to=end&extrafeatpresent=1&ef_MGC=16&ef_HPRD=32&ef_STS=64&ef_tRNA=128&ef_microRNA=256&ef_Exon=512 | Genbank entry]]

November 17, 2008, at 11:44 AM by 74.254.146.120 -

Changed lines 14-15 from:

-<Hanging indent
[[FASTA]]

to:

-<[[FASTA]]

November 17, 2008, at 11:44 AM by 74.254.146.120 -

Changed lines 14-16 from:

->[[FASTA]]
->[[ http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?WebEnv=1Dwr-mPlLeaZLF8Y0uque2FCSYxZgBIY-cPukTgY79493jFL77lBj3UsOe3u67E6cK4I69xZ9DXdPrL7T9GKPGl5R%40D44A7C4967AD5840_0131SID&db=protein&qty=1&c_start=1&list_uids=6320163&uids=&dopt=fasta&dispmax=5&sendto=&from=begin&to=end&extrafeatpresent=1&ef_MGC=16&ef_HPRD=32&ef_STS=64&ef_tRNA=128&ef_microRNA=256&ef_Exon=512 | Genbank entry]]

to:

-<Hanging indent
[[FASTA]]
-<[[ http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?WebEnv=1Dwr-mPlLeaZLF8Y0uque2FCSYxZgBIY-cPukTgY79493jFL77lBj3UsOe3u67E6cK4I69xZ9DXdPrL7T9GKPGl5R%40D44A7C4967AD5840_0131SID&db=protein&qty=1&c_start=1&list_uids=6320163&uids=&dopt=fasta&dispmax=5&sendto=&from=begin&to=end&extrafeatpresent=1&ef_MGC=16&ef_HPRD=32&ef_STS=64&ef_tRNA=128&ef_microRNA=256&ef_Exon=512 | Genbank entry]]

November 17, 2008, at 11:43 AM by 74.254.146.120 -

Changed line 13 from:

* SIR2 protein in the budding yeast.

to:

* SIR2 protein in the budding yeast (Genbank accession number NP_010242).

Changed lines 15-16 from:

->[[ http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?WebEnv=1Dwr-mPlLeaZLF8Y0uque2FCSYxZgBIY-cPukTgY79493jFL77lBj3UsOe3u67E6cK4I69xZ9DXdPrL7T9GKPGl5R%40D44A7C4967AD5840_0131SID&db=protein&qty=1&c_start=1&list_uids=6320163&uids=&dopt=fasta&dispmax=5&sendto=&from=begin&to=end&extrafeatpresent=1&ef_MGC=16&ef_HPRD=32&ef_STS=64&ef_tRNA=128&ef_microRNA=256&ef_Exon=512 | Genbank accession number NP_010242]]

to:

->[[ http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?WebEnv=1Dwr-mPlLeaZLF8Y0uque2FCSYxZgBIY-cPukTgY79493jFL77lBj3UsOe3u67E6cK4I69xZ9DXdPrL7T9GKPGl5R%40D44A7C4967AD5840_0131SID&db=protein&qty=1&c_start=1&list_uids=6320163&uids=&dopt=fasta&dispmax=5&sendto=&from=begin&to=end&extrafeatpresent=1&ef_MGC=16&ef_HPRD=32&ef_STS=64&ef_tRNA=128&ef_microRNA=256&ef_Exon=512 | Genbank entry]]

November 17, 2008, at 11:41 AM by 74.254.146.120 -

Changed lines 13-14 from:

* SIR2 protein in the budding yeast. [[FASTA]][[Genbank accession number NP_010242]]

to:

* SIR2 protein in the budding yeast.
->[[FASTA]]
->[[ http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?WebEnv=1Dwr-mPlLeaZLF8Y0uque2FCSYxZgBIY-cPukTgY79493jFL77lBj3UsOe3u67E6cK4I69xZ9DXdPrL7T9GKPGl5R%40D44A7C4967AD5840_0131SID&db=protein&qty=1&c_start=1&list_uids=6320163&uids=&dopt=fasta&dispmax=5&sendto=&from=begin&to=end&extrafeatpresent=1&ef_MGC=16&ef_HPRD=32&ef_STS=64&ef_tRNA=128&ef_microRNA=256&ef_Exon=512 | Genbank accession number NP_010242]]

November 17, 2008, at 11:40 AM by 74.254.146.120 -

Changed lines 13-14 from:

* SIR2 protein in the budding yeast. [[Genbank accession number NP_010242]]

to:

* SIR2 protein in the budding yeast. [[FASTA]][[Genbank accession number NP_010242]]

November 17, 2008, at 11:39 AM by 74.254.146.120 -

Changed lines 13-14 from:

* SIR2 gene in the budding yeast. [[protein]]

to:

* SIR2 protein in the budding yeast. [[Genbank accession number NP_010242]]

November 03, 2008, at 03:45 PM by 75.143.68.139 -

Changed lines 13-14 from:

* SIR2 gene in the budding yeast. [[DNA coding regions]] [[protein]]

to:

* SIR2 gene in the budding yeast. [[protein]]

November 03, 2008, at 03:43 PM by 75.143.68.139 -

Added lines 13-14:

* SIR2 gene in the budding yeast. [[DNA coding regions]] [[protein]]

October 30, 2008, at 05:14 PM by 192.203.127.3 -

Changed lines 9-12 from:

->->A molecular solution to the riddle of the giant panda's phylogeny.
->->Nature. 1985 Sep 12-18;317(6033):140-4.

to:

-> A molecular solution to the riddle of the giant panda's phylogeny.
-> Nature. 1985 Sep 12-18;317(6033):140-4.

October 30, 2008, at 05:13 PM by 192.203.127.3 -

Changed lines 9-12 from:

->A molecular solution to the riddle of the giant panda's phylogeny.
->Nature. 1985 Sep 12-18;317(6033):140-4.

to:

->->A molecular solution to the riddle of the giant panda's phylogeny.
->->Nature. 1985 Sep 12-18;317(6033):140-4.

October 30, 2008, at 05:13 PM by 192.203.127.3 -

Changed lines 8-12 from:

Ref: O'Brien SJ, Nash WG, Wildt DE, Bush ME, Benveniste RE.
A molecular solution to the riddle of the giant panda's phylogeny.
Nature. 1985 Sep 12-18;317(6033):140-4.

to:

->Ref: O'Brien SJ, Nash WG, Wildt DE, Bush ME, Benveniste RE.
->A molecular solution to the riddle of the giant panda's phylogeny.
->Nature. 1985 Sep 12-18;317(6033):140-4.

October 30, 2008, at 05:13 PM by 192.203.127.3 -

Changed lines 8-10 from:

Ref: O'Brien SJ, Nash WG, Wildt DE, Bush ME, Benveniste RE. A molecular solution to the riddle of the giant panda's phylogeny. Nature. 1985 Sep 12-18;317(6033):140-4.

to:

Ref: O'Brien SJ, Nash WG, Wildt DE, Bush ME, Benveniste RE.
A molecular solution to the riddle of the giant panda's phylogeny.
Nature. 1985 Sep 12-18;317(6033):140-4.

October 30, 2008, at 05:12 PM by 192.203.127.3 -

Changed lines 8-10 from:

to:

Ref: O'Brien SJ, Nash WG, Wildt DE, Bush ME, Benveniste RE. A molecular solution to the riddle of the giant panda's phylogeny. Nature. 1985 Sep 12-18;317(6033):140-4.

October 29, 2008, at 09:07 PM by 75.143.68.139 -

Changed lines 3-8 from:

* Bacterial 16s rDNA [[http://bioinformatics.org/ctls/download/data/16srDNA.fasta | FASTA]]; [[http://bioinformatics.org/ctls/download/data/16srDNA.txt | Text]]; What are outgroups?

* Giant panda and bear's 16s mitochondrial rDNA [[http://bioinformatics.org/ctls/download/data/panda16srDNA.fasta | FASTA]]; Who is giant panda's closest living relative?

to:

* Bacterial 16s rDNA [[http://bioinformatics.org/ctls/download/data/16srDNA.fasta | FASTA]]; [[http://bioinformatics.org/ctls/download/data/16srDNA.txt | Text]];
->What are outgroups?

* Giant panda and bear's 16s mitochondrial rDNA [[http://bioinformatics.org/ctls/download/data/panda16srDNA.fasta | FASTA]];
->Who is giant panda's closest living relative?

October 29, 2008, at 09:06 PM by 75.143.68.139 -

Changed lines 3-8 from:

* Bacterial 16s rDNA [[http://bioinformatics.org/ctls/download/data/16srDNA.fasta | FASTA]]; [[http://bioinformatics.org/ctls/download/data/16srDNA.txt | Text]];

* Panda and bear's 16s mitochondrial rDNA [[http://bioinformatics.org/ctls/download/data/panda16srDNA.fasta | FASTA]];

to:

* Bacterial 16s rDNA [[http://bioinformatics.org/ctls/download/data/16srDNA.fasta | FASTA]]; [[http://bioinformatics.org/ctls/download/data/16srDNA.txt | Text]]; What are outgroups?

* Giant panda and bear's 16s mitochondrial rDNA [[http://bioinformatics.org/ctls/download/data/panda16srDNA.fasta | FASTA]]; Who is giant panda's closest living relative?

October 29, 2008, at 09:06 PM by 75.143.68.139 -

Changed lines 3-4 from:

* Bacterial 16s rDNA [[http://bioinformatics.org/ctls/download/data/16srDNA.fasta | FASTA]]; [[http://bioinformatics.org/ctls/download/data/16srDNA.txt | Text]]\\

to:

* Bacterial 16s rDNA [[http://bioinformatics.org/ctls/download/data/16srDNA.fasta | FASTA]]; [[http://bioinformatics.org/ctls/download/data/16srDNA.txt | Text]];

October 29, 2008, at 09:05 PM by 75.143.68.139 -

Changed lines 3-6 from:

* 16s rDNA [[http://bioinformatics.org/ctls/download/data/16srDNA.fasta | FASTA]]; [[http://bioinformatics.org/ctls/download/data/16srDNA.txt | Text]]\\

to:

* Bacterial 16s rDNA [[http://bioinformatics.org/ctls/download/data/16srDNA.fasta | FASTA]]; [[http://bioinformatics.org/ctls/download/data/16srDNA.txt | Text]]\\

* Panda and bear's 16s mitochondrial rDNA [[http://bioinformatics.org/ctls/download/data/panda16srDNA.fasta | FASTA]];

October 29, 2008, at 08:29 PM by 75.143.68.139 -

Changed lines 4-7 from:

These sequences are aligned based on 16s rRNA structures in [[http://rdp.cme.msu.edu/|RDP]]

to:

October 29, 2008, at 08:08 PM by 75.143.68.139 -

Changed lines 3-4 from:

* 16s rDNA [[http://bioinformatics.org/ctls/download/data/16srDNA.fasta | FASTA]]; [[http://bioinformatics.org/ctls/download/data/16srDNA.txt | Text]]

to:

* 16s rDNA [[http://bioinformatics.org/ctls/download/data/16srDNA.fasta | FASTA]]; [[http://bioinformatics.org/ctls/download/data/16srDNA.txt | Text]]\\
These sequences are aligned based on 16s rRNA structures in [[http://rdp.cme.msu.edu/|RDP]]

October 29, 2008, at 08:06 PM by 75.143.68.139 -

Changed lines 3-4 from:

* 16s rDNA [[http://bioinformatics.org/ctls/download/data/16srDNA.fasta | FASTA]][[http://bioinformatics.org/ctls/download/data/16srDNA.txt | Text]]

to:

* 16s rDNA [[http://bioinformatics.org/ctls/download/data/16srDNA.fasta | FASTA]]; [[http://bioinformatics.org/ctls/download/data/16srDNA.txt | Text]]

October 29, 2008, at 08:06 PM by 75.143.68.139 -

Changed lines 3-5 from:

* [[16s rDNA]]

to:

* 16s rDNA [[http://bioinformatics.org/ctls/download/data/16srDNA.fasta | FASTA]][[http://bioinformatics.org/ctls/download/data/16srDNA.txt | Text]]

October 27, 2008, at 09:36 PM by 75.143.68.139 -

Changed lines 1-4 from:

* [[http://bioinformatics.org/ctls/download/data/ | 16s rDNA]]

* [[http://bioinformatics.org/ctls/download/data/ | MEGA examples]]

to:

* [[http://bioinformatics.org/ctls/download/MEGAExamples.zip | MEGA examples]]

* [[16s rDNA]]

October 27, 2008, at 09:34 PM by 75.143.68.139 -

Added lines 3-4:

* [[http://bioinformatics.org/ctls/download/data/ | MEGA examples]]

September 22, 2008, at 08:54 PM by 75.143.68.139 -

Changed line 2 from:

* [[PDB data]]

to:

Added lines 4-6:

* [[PDB data]]

Added line 8:

September 22, 2008, at 08:47 PM by 75.143.68.139 -

Changed line 3 from:

to:

* [[Proteins with LCRs]]

September 16, 2008, at 04:46 PM by 192.203.127.3 -

Added lines 3-4:

* [[http://www.geospiza.com/education/materials.html#data | Geospiza data ]]

September 01, 2008, at 11:14 PM by 75.143.68.139 -

Added lines 1-2:

* [[http://bioinformatics.org/ctls/download/data/ | 16s rDNA]]
* [[PDB data]]

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