org.metaqtl
Class MetaQtlModel

java.lang.Object
  org.metaqtl.MetaQtlModel

public class MetaQtlModel
extends java.lang.Object

Field Summary

java.lang.String[]	chromNames The chromosomes.
int[][]	models The number of Qtl per chromosome and per trait.
java.lang.String[][]	traitNames The trait names per chromosome.

Constructor Summary

MetaQtlModel()

MetaQtlModel(int nchr)

Method Summary

java.lang.String[]	getChromNames() Returns the names of the chromosomes.
java.lang.String	getCriterion()
int	getModel(int i, int j)
int	getModel(java.lang.String chrom, java.lang.String trait)
java.lang.String[]	getTraitNames(int cidx)
java.lang.String[]	getTraitNames(java.lang.String chrom)
void	setChromName(int cidx, java.lang.String name)
void	setCriterion(java.lang.String critName) Set the criterion name which was used to obtain this model
void	setModel(int cidx, int[] models)
void	setTraitNames(int cidx, java.lang.String[] traits)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

chromNames

public java.lang.String[] chromNames

The chromosomes.

traitNames

public java.lang.String[][] traitNames

The trait names per chromosome.

models

public int[][] models

The number of Qtl per chromosome and per trait.

Constructor Detail

MetaQtlModel

public MetaQtlModel()

MetaQtlModel

public MetaQtlModel(int nchr)

Method Detail

getChromNames

public java.lang.String[] getChromNames()

Returns the names of the chromosomes.

Parameters:

chrom -

Returns:

getTraitNames

public java.lang.String[] getTraitNames(java.lang.String chrom)

Parameters:

chrom -

Returns:

getTraitNames

public java.lang.String[] getTraitNames(int cidx)

Parameters:

chrom -

Returns:

getModel

public int getModel(java.lang.String chrom,
                    java.lang.String trait)

Parameters:

chrom -

string -

Returns:

setModel

public void setModel(int cidx,
                     int[] models)

Parameters:

cidx -

tidx -

setChromName

public void setChromName(int cidx,
                         java.lang.String name)

Parameters:

cidx -

name -

setTraitNames

public void setTraitNames(int cidx,
                          java.lang.String[] traits)

Parameters:

cidx -

name -

setCriterion

public void setCriterion(java.lang.String critName)

Set the criterion name which was used to obtain this model

Parameters:

critName -

getModel

public int getModel(int i,
                    int j)

Parameters:

i -

j -

Returns:

getCriterion

public java.lang.String getCriterion()

Returns: