org.metaqtl
Class QtlPartition

java.lang.Object
  org.metaqtl.QtlPartition

public class QtlPartition
extends java.lang.Object

Field Summary

static int	HORIZONTAL_MODE
int	mode The mode of representation
int	np The number of partition.
int	nqtl The number of Qtl.
java.lang.String[]	pnames The partition names.
double[][]	proba The probabilities of each Qtl to belong to each partition.
double[]	qtlCI The Qtl confidence intervals.
java.lang.String[]	qtlNames The qtl names
double[]	qtlPos The Qtl positions
Tree	tree The Qtl tree.
static int	VERTICAL_MODE

Constructor Summary

QtlPartition()

Method Summary

java.util.ArrayList	getPartNames()
void	rebuildPartition(java.lang.String[] pnames)
void	setTree(Tree tree)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

HORIZONTAL_MODE

public static final int HORIZONTAL_MODE

See Also:

Constant Field Values

VERTICAL_MODE

public static final int VERTICAL_MODE

See Also:

Constant Field Values

nqtl

public int nqtl

The number of Qtl.

np

public int np

The number of partition.

pnames

public java.lang.String[] pnames

The partition names.

qtlNames

public java.lang.String[] qtlNames

The qtl names

proba

public double[][] proba

The probabilities of each Qtl to belong to each partition.

qtlPos

public double[] qtlPos

The Qtl positions

qtlCI

public double[] qtlCI

The Qtl confidence intervals.

tree

public Tree tree

The Qtl tree.

mode

public int mode

The mode of representation

Constructor Detail

QtlPartition

public QtlPartition()

Method Detail

getPartNames

public java.util.ArrayList getPartNames()

Returns:

setTree

public void setTree(Tree tree)

Parameters:

tree -

rebuildPartition

public void rebuildPartition(java.lang.String[] pnames)

Parameters:

names -