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Assistant Professor in Genomics
Colgate University: Office of the Provost of the Dean of the Faculty (PDOF): Division of Natural Sciences and Mathematics: Biology Department
Location: Hamilton, NY
Open Date: Sep 03, 2025
Salary Range or Pay Grade: $94,800 (for ABD candidates) to $98,800 (for candidates with PhD in hand)

Description:

The Department of Biology at Colgate University invites applications for a tenure-stream position in Genomics at the rank of Assistant Professor beginning fall semester 2026. The successful candidate will join a biology faculty committed to innovative teaching and research involving undergraduates in a liberal-arts setting. The candidate is expected to develop a productive research program in genomics, broadly defined; candidates who utilize a combination of bench/field research and computational tools are most highly desired. The ideal candidate will bridge biological disciplines and/or work across levels of organization. The individual hired will teach in either of two team-taught foundations courses, Evolution, Ecology, and Diversity (Biol181) or Molecules, Cells, and Genes (Biol182); elective courses in genomics or related fields; and a senior research tutorial in their area of interest. The successful candidate will also participate in all-university programs, including the Liberal Arts Core Curriculum. The successful candidate may opt to lead the Bethesda Biomedical Study Group or established Study Groups for Colgate students; opportunities also exist to develop international off-campus study programs. Completion of PhD prior to or shortly after the date of hire is required, and teaching experience is desirable.

A complete application will include a cover letter, curriculum vitae, unofficial transcripts, a research statement, and a teaching philosophy statement that includes strategies for engaging students from diverse backgrounds. Please also include a list of 3 names of individuals who would be prepared to submit reference letters at a later date. All materials can be submitted through https://apply.interfolio.com/173010. More information about Colgate University, the Biology Department, and the application materials can be found at this website. The review of applications will begin on October 10, 2025, and continue until the position is filled.

Colgate is a vibrant liberal arts university of 3,200 students situated in central New York state. Colgate faculty are committed to excellence in both teaching and scholarship, and Colgate strives to be a community supportive of diverse perspectives and identities. Applicants with dual-career considerations can find postings of other employment opportunities at Colgate and at other institutions of higher education in upstate New York at this website.

Campus Crime Reporting and Statistics:

The Department of Campus Safety at Colgate University will provide upon request a copy of Colgate's Annual Security and Fire Safety Report. This report includes statistics as reported to the United States Department of Education for the previous three years concerning reported: 1. crimes that occurred on-campus; in certain off-campus buildings or property owned or controlled by Colgate University; and on public property within, or immediately adjacent to and accessible from, the campus and 2. fires that occurred in student housing facilities. The report also includes institutional policies concerning campus security and fire safety, such as policies concerning sexual assault, life safety systems, and other related matters. You may access the report from the Clery Compliance web page here. Printed copies of this report may be obtained upon request from the Department of Campus Safety via e-mail at cusafety[at]colgate.edu.

Qualifications:

Completion of PhD prior to or shortly after the date of hire is required, and teaching experience is desirable.

Application Instructions:

A complete application will include a cover letter, curriculum vitae, unofficial transcripts, a research statement, and a teaching philosophy statement that includes strategies for engaging students from diverse backgrounds. Please also include a list of 3 names of individuals who would be prepared to submit reference letters at a later date.

Equal Employment Opportunity Statement:

Affirmative Action/Equal Opportunity Policy Statement:
It is the policy of Colgate University not to discriminate against any employee or applicant for employment on the basis of their race, color, creed, religion, age, sex, pregnancy, national origin, marital status, disability, protected Veterans status, sexual orientation, gender identity or expression, being or having been victims of domestic violence or stalking, familial status, or any other categories covered by law. Colgate is an Equal Opportunity/Affirmative Action employer. Candidates with disabilities, and protected veterans are encouraged to apply.

Grant Belgard of The Bioinformatics CRO (https://www.bioinformaticscro.com) interviewed me about the past, present and future of Bioinformatics.org in his podcast.

The podcast is now online. Here are the links to the episode on Apple, Spotify, and the Bioinformatics CRO website:

Apple: https://podcasts.apple.com/us/podcast/the-bioinformatics-cro-podcast/id1535886933?i=1000724490820

Spotify: https://open.spotify.com/episode/1GTFyxUKBqTNt7E9g8X4WH?si=5IzdGrn-Tqys4aZq4kSlVA

Website: https://www.bioinformaticscro.com/podcast/jeff-bizzaro/

About The Bioinformatics CRO: It is a fully distributed contract research company that serves the computational biology needs of academics, science and research institutes, pharmaceutical companies, and biotechs, with a focus on genomics.

Cheers,
Jeff

http://www.simonsfoundation.org/flatiron/center-for-computational-biology/ is seeking an experienced software engineer to be the Project Lead for HumanBase (http://hb.flatironinstitute.org), a dynamic and interactive web-based platform that supports thousands of biomedical researchers in exploring the molecular mechanisms of human disease. This position is ideal for an experienced engineering leader with bioinformatics experience who thrives on solving complex problems at the intersection of large-scale data, advanced analytics, and scientific discovery. This is a high-impact role that directly advances the study of human genomics and disease.

The successful candidate will lead technical direction and execution, guide other software engineers, and collaborate closely with researchers at the Center for Computational Biology to translate cutting-edge computational biology into robust software tools. The Project Lead will be a hands-on engineering leader with experience in biological data and -omics technology, as well as a complementary skillset that includes both writing high-quality code and managing a small team of software engineers. Success in this role depends on the ability to translate biological questions into computational solutions, collaborate closely with internal scientific stakeholders, and drive technically rigorous projects that advance our understanding of human biology.

ESSENTIAL FUNCTIONS/RESPONSIBILITIES:

• Serve as technical lead for HumanBase, guiding the design, architecture, and implementation of new features and major infrastructure upgrades
• Lead and mentor a team of full stack software engineers, ensuring high-quality code, efficient workflows, and continuous professional development
• Plan, develop, and optimize scalable genomics data processing pipelines
• Integrate machine learning methods into production pipelines to analyze heterogeneous biological datasets
• Establish and enforce software engineering best practices, including coding standards, version control, documentation, testing, and deployment workflows
• Collaborate cross-functionally with computational biologists, data scientists, and external partners to align engineering efforts with scientific goals
• Stay current with emerging technologies in cloud infrastructure, bioinformatics, and scientific computing and assess their relevance for HumanBase
• Perform additional duties or projects as assigned

MINIMUM QUALIFICATIONS:

Education:

• B.S. in Computer Science, Software Engineering, or a related technical field

Experience:

• At least 10 years of professional software experience in software engineering, including leading teams and direct involvement in the planning, design, and development of software
• Experience collaborating daily with other key team members of different technical and scientific backgrounds
• Proficiency in full stack software development
• Extensive experience in Python, including developing data pipelines and software libraries
• Demonstrated experience with the full software development lifecycle (SDLC), including testing, CI/CD, version control, and deployment
• Experience building and maintaining web-based interfaces and applications
• Background in computational biology, bioinformatics, or a related field, with experience developing software in support of biological research
• Experience working with large, heterogeneous biological datasets – ideally in genomics or biomedical contexts
• Related Skills & Other Requirements
• Effective technical leadership and mentorship abilities
• Excellent communication skills, especially when working across disciplinary boundaries
• Deep curiosity about science and a passion for building tools that empower scientific discovery
• Strong sense of ownership and drive for continuous improvement

COMPENSATION:

• The range for full-time annual compensation for this position is $190,000-$235,000 based on experience.
• In addition to competitive salaries, the Simons Foundation provides employees with an outstanding benefits package.

REQUIRED APPLICATION MATERIALS:

• Please submit a resume and cover letter stating your interest in the position.

Our Commitment to Expanding Pathways to Science & Opportunities for All:

Many of the greatest ideas and discoveries come from a diverse mix of minds, backgrounds, and experiences. The Simons Foundation is committed to advancing basic science and mathematics to benefit humankind and expand our collective understanding of our world. As part of our mission, we support partners, programs, and initiatives that seek to broaden the scientific community and open pathways to science and mathematics careers.

The Simons Foundation provides equal opportunities to all applicants without regard to race, religion, color, age, sex, pregnancy, national origin, sexual orientation, gender identity, genetic disposition, neurodiversity, disability, veteran status, or any other protected category under federal, state, and local law.

HOW TO APPLY:

To apply, please visit: https://apptrkr.com/6425350

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Let's be real – college is expensive. Whether you're juggling student loans or saving up for lab supplies, a little extra cash can go a long way. That's where the Creative Biolabs Scholarship (https://www.creative-biolabs.com/scholarship-program.html) comes in, offering a sweet $1,000 award to one standout science student, which could be your ticket to easing some financial pressure and showing off your scientific smarts.

If you're majoring in a science-related field like biology, chemistry, biochemistry, or molecular biology, and you've got the grades, this one's definitely worth a shot. Read on to find out exactly what you need to apply – and how to make your application shine.

Who Can Apply?

First thing's first: are you eligible? The Creative Biolabs scholarship is open globally, which means whether you're studying in Boston or Berlin, you're good to go – as long as you check these boxes:
√ Enrolled in an accredited college or university (freshman, undergrad, grad, or PhD).
√ Major in a science-related field (e.g., Biology, Chemistry, Biochemistry, Molecular Biology).
√ Maintain at least a 3.0 GPA (B average).

Pretty doable, right?

√ What They're Looking For

This isn't just about your GPA. The Selection Committee is diving deep into your story. Here's what they care about:

Academic Ability – Not just your transcript, but your learning plan. Show them what you're curious about and how you're working toward it.
Leadership Skills – If you've led a club, mentored others, or inspired your peers, flaunt it!
Community Spirit – Volunteering, activism, or community outreach? Big plus.

In other words: grades matter, but heart and hustle count too.

How to Apply (Don't Skip a Step!)

You'll need to send a complete application package to the designated email address with the subject line:

"2025 Creative Biolabs Scholarship Application – Full Name".

Here's the checklist:

√ Completed Application Form – Download it from their scholarship page.
√ Transcript – Official or unofficial.
√ Recommendation Letter – From a teacher, counselor, or community leader.
√ Essay or PowerPoint Presentation – Your chance to shine. Pick ONE topic from below and go all in.

Essay/Presentation Topics (choose one):

√ Overview of Neurodegenerative Diseases and Disease-Related Biomarkers
√ Novel Gene Delivery Systems for Gene Therapy
√ mRNA-Based Therapeutics Application
√ Overview of Clinical Applications of Stem Cell Therapy

Essay should be 800--1,000 words, and if you go the PowerPoint route, it should be 10-12 slides with lecture notes. Either way, it has to be original, clear, and grammatically solid.

• Heads up: incomplete submissions = automatic rejection. Double-check everything before you hit send.

Deadlines & Announcement
Submission Deadline: September 30, 2025
Announcement: October 15, 2025

The winner will be contacted via email and their name will go up on the Creative Biolabs website. (Yep, time to get famous.)

Bonus Step: Acceptance Video

If you win, you'll be asked to submit a video acceptance speech. Nothing too fancy, just something authentic that shares your gratitude and goals. In addition, your story may get featured on Creative Biolabs' website or social media.

Final Thoughts:

Creative Biolabs – an innovative biotech company supporting researchers worldwide – is all about encouraging the next generation of scientific minds. This scholarship isn't just about the money, but about giving a platform to students with passion, purpose, and a vision for impact.

So if you're studying science and looking for an opportunity to get your work noticed (and maybe upgrade your coffee budget while you're at it), this one's calling your name.

About:

As a trusted end-to-end CRO, Creative Biolabs (https://www.creative-biolabs.com) specializes in providing comprehensive solutions across antibody engineering, cell and gene therapy development, and 3D disease modeling to accelerate the journey from discovery to preclinical success.

Predicting antibody and NANOBODY® VHH--antigen complexes remains a notable gap in current AI models, limiting their utility in drug discovery. We present SNAC-DB, an open-source, machine-learning-ready database and pipeline developed by structural biologists and ML researchers to address this challenge.

Key features of SNAC-DB include:

• Expanded Coverage: 32% more structural diversity than SAbDab, capturing overlooked assemblies such as antibodies/nanobodies as antigens, complete multi-chain epitopes, and weak CDR crystal contacts.
• ML-Friendly Data: Cleaned PDB/mmCIF files, atom37 NumPy arrays, and unified CSV metadata to eliminate preprocessing hurdles.
• Transparent Redundancy Control: Multi-threshold Foldseek clustering for principled sample weighting, ensuring every experimental structure contributes.
• Rigorous Benchmark: An out-of-sample test set comprising public PDB entries post--May 30, 2024 (disclosed) and confidential therapeutic complexes.

Using this benchmark, we evaluated six leading models (AlphaFold2.3?multimer, Boltz-2, Boltz-1x, Chai-1, DiffDock-PP, GeoDock) and found that success rates rarely exceed 25 %, built-in confidence metrics and ranking often misprioritize predictions, and all struggle with novel targets and binding poses.

I had the opportunity to present this work last week at the [ICML] Int'l Conference on Machine Learning 2025 Workshop on DataWorld: Unifying Data Curation Frameworks Across Domains (https://dataworldicml2025.github.io) in Vancouver.

• Paper: https://www.researchgate.net/publication/393900649_SNAC-DB_The_Hitchhiker's_Guide_to_Building_Better_Predictive_Models_of_Antibody_NANOBODY_R_VHH-Antigen_Complexes
• Dataset: https://zenodo.org/records/16226208
• Code: https://github.com/Sanofi-Public/SNAC-DB

I hope SNAC-DB will accelerate the development and evaluation of more accurate models for antibody/NANOBODY® VHH complex prediction.

We welcome any comments on how to make this resource more user-friendly or of any deficiencies.

Best,
Abhinav Gupta
Senior AI/ML Scientist
Large Molecule Research, Sanofi
Email: abhinav.gupta[at]sanofi.com