User friendly PDB (Protein Data Bank) file editor with graphic user interface

To Download : http://bioinformatics.org/pdbeditor/PDBEditor.jar

Run by : java -jar PDBEditor.jar

Tool for protein crystallographers to expedite selective edit / data extraction / analysis of their PDB files

Runs on any operating system supported by Java 6 (Windows, MacOS, Linux) < Java 6 is required - download FREE from http://www.java.com >

General Features

• Search and edit (in parallel) coordinates based on conditions user specifies

• Quickly extract and write selected data in tab delimited format to analyze in spreadsheet or other statistical programs using clipboard action (cut + copy + paste)

• Quickly amend atoms and spacegroup by clipboard action

• Manipulate atoms in fractional coordinates

• Edit spacegroup and calculate SCALE matrix

• Arrange / sort / correct atom orderings

Extended Features

• Selectively generate symmetry mates in user defined condition to analyze packing of atoms in protein crystal to help aid choosing molecular replacement solutions

• Selectively analyze atom distances to expedite calculation of interaction distances

• Selectively rotate / translate atoms

• Selectively analyze stats (average, standard deviation, maximum, minimum) of atom's coordinates, B-factor, occupancy, etc.

• Extract sequence from atoms in FASTA format