[BiO BB] Transcription factors prediction

[James Stroud]

Not that it answers your question, but here is a critical read on the subject:

Systematic discovery of regulatory motifs in human promoters and 3' UTRs by 
comparison of several mammals.
Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, 
Kellis M.
Nature. 2005 Feb 27; [Epub ahead of print]

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15735639

James

On Tuesday 08 March 2005 01:50 pm, Andrea Franceschini wrote:
> In   "Nature Biotechnology  23, 137 - 144  Published online: 06 January
> 2005; Assessing computational tools for the discovery of transcription
> factor binding sites"  you can find the unswer to your question.
> http://www.nature.com/cgi-taf/DynaPage.taf?file=/nbt/journal/v23/n1/full/nb
>t1053.html
>
> The suggestion in the article to obtain the best results is to analyze your
> sequences with both these software :
> Weeder Web:  http://159.149.109.16:8080/weederWeb/
> Motif Sampler: http://www.esat.kuleuven.ac.be/~thijs/Work/MotifSampler.html
>
>
>
> Andrea Franceschini
>
>
>
>
>
> ----- Original Message -----
> From: "Davide Eletto" <deletto at unisa.it>
> To: "The general forum at Bioinformatics.Org"
> <bio_bulletin_board at bioinformatics.org>
> Sent: Tuesday, March 08, 2005 3:35 PM
> Subject: [BiO BB] Transcription factors prediction
>
> > Hi there,
> > anyone of you could be so kind to give me the name of the most common
> > FREE *Transcription factors prediction *software (online, indeed), that
> > is able to retrieve a list of putative nuclear transc fact. by a DNA
> > sequence?
> >
> > Thanks a lot in advance
> >
> > davide eletto
> > ITALIA (one of six nations)
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-- 
James Stroud, Ph.D.
UCLA-DOE Institute for Genomics and Proteomics
Box 951570
Los Angeles, CA 90095