[BiO BB] Aligning sequence from pdb to an established MSA

[Douglas Theobald]

Many alignment programs can do it, like MUSCLE or even CLUSTALW.

On Aug 31, 2007, at 12:31 PM, Dan Bolser wrote:

> HMM like HMMER can do this.
>
> On 30/08/2007, Kai Ye <k.ye at lacdr.leidenuniv.nl> wrote:
>>
>> Dear all:
>>
>> Any idea about a linux program to align the sequence extracted  
>> from pdb
>> with
>> an established MSA. In the MSA there may or may not be a sequence
>> identical
>> to the one from pdb.
>>
>> Thanks in advance!
>>
>> Kai
>>
>>
>>
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>
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