[Biococoa-dev] hello!
Alexander Griekspoor
mek at mekentosj.com
Sat Feb 5 10:17:12 EST 2005
Hi Julian,
You're very welcome! Great to have you listen along, don't hesitate to
ask for any introduction or clarification if you need it.
Cheers,
Alex
On 4-feb-05, at 15:02, Julian Blow wrote:
> Dear Biococoa-dev Subscribers,
>
> just a quick word to let you know I've added myself to the mailing
> list as suggested by Koen. I'll keep an eye on what's going on, and
> will contribute if and when I think I can add something.
>
> Regards,
>
> Julian
>
>
>> Dear Julian,
>>
>> Thanks for your reply. Too bad you don't have enough time right now
>> to join the development of BioCocoa - I completely understand it
>> though, all current developers work on BioCocoa on the side. So
>> either solution you suggested works fine for me. An alternative could
>> be for you to for now only join the mailing list. This way you get an
>> idea of the current developments in the project, and you can jump in
>> in case there is a subject that is in your field. But it is
>> completely up to you.
>>
>> Regards,
>>
>> - Koen.
>>
>>
>>
>> On Jan 31, 2005, at 7:28 AM, Julian Blow wrote:
>>
>>> Dear Koen
>>>
>>> I've had a look at what you're up to, and I think it sounds very
>>> worthwhile. I'd be keen to support and help your project if I could.
>>> However, I don't think I'd be much help in doing coding at present.
>>> The main problem is that programming is only a sideline for me (it
>>> has to be squeezed into my 'spare time' either late at night or
>>> early in the morning) and most of my energy is directed to running
>>> my lab. I already have two major software projects I'm committed to
>>> at present; I guess these will take up most of my coding time for
>>> the next 6 months at least.
>>>
>>> So what should I do? I'm happy to join if it would help you, but I
>>> really would not be active, at least not until I've finished my
>>> other projects. Alternatively, I could leave you my goodwill, and
>>> you could contact me should you need anything you think I could
>>> specifically help with, or I could contact you when my current
>>> projects are done and I have coding time on my hands.
>>>
>>> Regards,
>>>
>>> Julian
>>>
>>>> Dear Julian,
>>>>
>>>> I found your name on the CocoaDev mailing list. I am one of the
>>>> core developers of the BioCocoa project, an open source Cocoa
>>>> framework for reading, writing, and manipulating various biological
>>>> sequences. Originally the framework only focused on reading and
>>>> writing sequences, and was also aimed at GNUStep, which is still
>>>> the official version that you can download from the website at
>>>> http://bioinformatics.org/biococoa/. A few months ago a couple of
>>>> mac loving bioscientists joined the project, and it was transformed
>>>> in a Cocoa-only framework, and extended to be able to do other
>>>> things with sequences than reading and writing. You could say that
>>>> it is trying to be the Cocoa/ObjC sibling of BioJava, BioPerl, etc.
>>>>
>>>> So far we have created a set of new classes, that we believe should
>>>> be a solid base for extending the whole framework. However, we
>>>> still have many discussions what would be the best design. For
>>>> instance, currently we have a core class BCSequence, with various
>>>> subclasses for DNA, RNA, and proteins. We have had many discussions
>>>> whether we actually should subclass BCSequence (compare eg BioJava
>>>> which doesn't subclass it's main sequence class). As an
>>>> alternative, recently we have been discussing if maybe we should
>>>> use the class cluster design for the various sequence classes,
>>>>
>>>> At the moment we are only a small group of developers, mainly with
>>>> a scientific background. Based on the description on the CocoaDev
>>>> webpage, it seems you could be a valuable addition to the BioCocoa
>>>> project. So we were wondering if you would be interested in joining
>>>> the development team, and the discussions on our mailing list (see
>>>> http://bioinformatics.org/project/?group_id=318 for more info). To
>>>> download the source code from CVS, please follow these
>>>> instructions:
>>>>
>>>> * First, log in by typing the following. When prompted for the
>>>> password, just press Enter.
>>>>
>>>> cvs -d:pserver:anonymous at bioinformatics.org:/cvsroot login
>>>>
>>>> * Then, type the following to download the project:
>>>>
>>>> cvs -d:pserver:anonymous at bioinformatics.org:/cvsroot checkout -P
>>>> BioCocoa
>>>>
>>>>
>>>>
>>>> Feel free to have a look at the code and the current discussions,
>>>> and let me or one of the other developers know if you are
>>>> interested. We look forward to your reply,
>>>>
>>>>
>>>> On behalf of the BioCocoa Team,
>>>>
>>>> Best regards,
>>>>
>>>> Koen van der Drift
>>>
>
> --
> Prof. J. Julian Blow, FRSE
> Cancer Research UK Chromosome Replication Research Group
> Wellcome Trust Biocentre, University of Dundee
> Dow Street, Dundee DD1 5EH, Scotland, UK
> Tel: (+44) (0)1382-345797 Fax: (+44) (0)1382-348072
> E-mail: j.j.blow at dundee.ac.uk
> http://www.dundee.ac.uk/biocentre/
> _______________________________________________
> Biococoa-dev mailing list
> Biococoa-dev at bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/biococoa-dev
>
>
*********************************************************
** Alexander Griekspoor **
*********************************************************
The Netherlands Cancer Institute
Department of Tumorbiology (H4)
Plesmanlaan 121, 1066 CX, Amsterdam
Tel: + 31 20 - 512 2023
Fax: + 31 20 - 512 2029
AIM: mekentosj at mac.com
E-mail: a.griekspoor at nki.nl
Web: http://www.mekentosj.com
Windows vs Mac
65 million years ago, there were more
dinosaurs than humans.
Where are the dinosaurs now?
*********************************************************
More information about the Biococoa-dev
mailing list