Basic Information
Gene ID 365155 ; Check Expression Profles ; Check TFs & Targets Binding
Gene Name Prdm9
Full Name Histone-lysine N-methyltransferase PRDM9
Organism Rattus norvegicus [10116]

Cross Reference
UniProt P0C6Y7 UniGene Rn.124847
PDB NULL OMIM NULL
KEGG rno:365155 UCSC RGD:1305247

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING 10116.ENSRNOP00000060531

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
ENSRNOP00000060531 Gene3D G3DSA:3.30.160.60 IPR013087 522 547 8.80e-13 Zinc finger C2H2-type/integrase DNA-binding domain
ENSRNOP00000060531 Gene3D G3DSA:3.30.160.60 IPR013087 548 575 9.10e-18 Zinc finger C2H2-type/integrase DNA-binding domain
ENSRNOP00000060531 Gene3D G3DSA:3.30.160.60 IPR013087 576 603 1.40e-17 Zinc finger C2H2-type/integrase DNA-binding domain
ENSRNOP00000060531 Gene3D G3DSA:3.30.160.60 IPR013087 604 630 1.30e-18 Zinc finger C2H2-type/integrase DNA-binding domain
ENSRNOP00000060531 Gene3D G3DSA:3.30.160.60 IPR013087 631 649 1.50e-16 Zinc finger C2H2-type/integrase DNA-binding domain
ENSRNOP00000060531 Gene3D G3DSA:3.30.160.60 IPR013087 650 677 1.00e-17 Zinc finger C2H2-type/integrase DNA-binding domain
ENSRNOP00000060531 Gene3D G3DSA:3.30.160.60 IPR013087 678 705 8.70e-19 Zinc finger C2H2-type/integrase DNA-binding domain
ENSRNOP00000060531 Gene3D G3DSA:3.30.160.60 IPR013087 706 738 1.60e-18 Zinc finger C2H2-type/integrase DNA-binding domain
ENSRNOP00000060531 Gene3D G3DSA:3.30.160.60 IPR013087 739 761 4.50e-16 Zinc finger C2H2-type/integrase DNA-binding domain
ENSRNOP00000060531 Gene3D G3DSA:3.30.160.60 IPR013087 762 796 1.90e-17 Zinc finger C2H2-type/integrase DNA-binding domain
ENSRNOP00000060531 Pfam PF00096 IPR007087 574 596 8.50e-06 Zinc finger, C2H2
ENSRNOP00000060531 Pfam PF00856 IPR001214 314 362 1.60e-04 SET domain
ENSRNOP00000060531 Pfam PF01352 IPR001909 32 69 3.50e-07 Krueppel-associated box
ENSRNOP00000060531 Pfam PF09514 IPR019041 175 206 1.40e-11 SSXRD motif
ENSRNOP00000060531 ProSitePatterns PS00028 IPR007087 394 415 - Zinc finger, C2H2
ENSRNOP00000060531 ProSitePatterns PS00028 IPR007087 548 568 - Zinc finger, C2H2
ENSRNOP00000060531 ProSitePatterns PS00028 IPR007087 576 596 - Zinc finger, C2H2
ENSRNOP00000060531 ProSitePatterns PS00028 IPR007087 604 624 - Zinc finger, C2H2
ENSRNOP00000060531 ProSitePatterns PS00028 IPR007087 632 652 - Zinc finger, C2H2
ENSRNOP00000060531 ProSitePatterns PS00028 IPR007087 660 680 - Zinc finger, C2H2
ENSRNOP00000060531 ProSitePatterns PS00028 IPR007087 688 708 - Zinc finger, C2H2
ENSRNOP00000060531 ProSitePatterns PS00028 IPR007087 716 736 - Zinc finger, C2H2
ENSRNOP00000060531 ProSitePatterns PS00028 IPR007087 744 764 - Zinc finger, C2H2
ENSRNOP00000060531 ProSitePatterns PS00028 IPR007087 772 792 - Zinc finger, C2H2
ENSRNOP00000060531 ProSiteProfiles PS50157 IPR007087 522 545 0.00e-00 Zinc finger, C2H2
ENSRNOP00000060531 ProSiteProfiles PS50157 IPR007087 546 573 0.00e-00 Zinc finger, C2H2
ENSRNOP00000060531 ProSiteProfiles PS50157 IPR007087 574 601 0.00e-00 Zinc finger, C2H2
ENSRNOP00000060531 ProSiteProfiles PS50157 IPR007087 602 629 0.00e-00 Zinc finger, C2H2
ENSRNOP00000060531 ProSiteProfiles PS50157 IPR007087 630 657 0.00e-00 Zinc finger, C2H2
ENSRNOP00000060531 ProSiteProfiles PS50157 IPR007087 658 685 0.00e-00 Zinc finger, C2H2
ENSRNOP00000060531 ProSiteProfiles PS50157 IPR007087 686 713 0.00e-00 Zinc finger, C2H2
ENSRNOP00000060531 ProSiteProfiles PS50157 IPR007087 714 741 0.00e-00 Zinc finger, C2H2
ENSRNOP00000060531 ProSiteProfiles PS50157 IPR007087 742 769 0.00e-00 Zinc finger, C2H2
ENSRNOP00000060531 ProSiteProfiles PS50157 IPR007087 770 796 0.00e-00 Zinc finger, C2H2
ENSRNOP00000060531 ProSiteProfiles PS50280 IPR001214 248 362 0.00e-00 SET domain
ENSRNOP00000060531 ProSiteProfiles PS50806 IPR003655 27 90 0.00e-00 Krueppel-associated box-related
ENSRNOP00000060531 SMART SM00317 IPR001214 248 368 1.10e-05 SET domain
ENSRNOP00000060531 SMART SM00349 IPR001909 30 89 4.20e-11 Krueppel-associated box
ENSRNOP00000060531 SMART SM00355 IPR015880 392 415 4.60e-03 Zinc finger, C2H2-like
ENSRNOP00000060531 SMART SM00355 IPR015880 521 540 1.70e-01 Zinc finger, C2H2-like
ENSRNOP00000060531 SMART SM00355 IPR015880 546 568 5.60e-07 Zinc finger, C2H2-like
ENSRNOP00000060531 SMART SM00355 IPR015880 574 596 5.50e-07 Zinc finger, C2H2-like
ENSRNOP00000060531 SMART SM00355 IPR015880 602 624 5.50e-07 Zinc finger, C2H2-like
ENSRNOP00000060531 SMART SM00355 IPR015880 630 652 5.50e-07 Zinc finger, C2H2-like
ENSRNOP00000060531 SMART SM00355 IPR015880 658 680 3.70e-07 Zinc finger, C2H2-like
ENSRNOP00000060531 SMART SM00355 IPR015880 686 708 9.30e-07 Zinc finger, C2H2-like
ENSRNOP00000060531 SMART SM00355 IPR015880 714 736 2.00e-06 Zinc finger, C2H2-like
ENSRNOP00000060531 SMART SM00355 IPR015880 742 764 1.90e-05 Zinc finger, C2H2-like
ENSRNOP00000060531 SMART SM00355 IPR015880 770 792 7.70e-07 Zinc finger, C2H2-like
ENSRNOP00000060531 SUPERFAMILY SSF109640 IPR001909 31 83 0.00e-00 Krueppel-associated box

Pfam Annotation
Protein Pfam ID E.value Name Description
ENSRNOP00000060531 PF00096 0 zf-C2H2 Zinc finger, C2H2 type
ENSRNOP00000060531 PF13465 0 zf-H2C2_2 Zinc-finger double domain
ENSRNOP00000060531 PF13894 5.3e-36 zf-C2H2_4 C2H2-type zinc finger
ENSRNOP00000060531 PF09514 6.2e-12 SSXRD SSXRD motif
ENSRNOP00000060531 PF12171 7.4e-11 zf-C2H2_jaz Zinc-finger double-stranded RNA-binding
ENSRNOP00000060531 PF13912 6.1e-08 zf-C2H2_6 C2H2-type zinc finger
ENSRNOP00000060531 PF01352 1.5e-07 KRAB KRAB box
ENSRNOP00000060531 PF13909 7.6e-07 zf-H2C2_5 C2H2-type zinc-finger domain
ENSRNOP00000060531 PF00856 0.00013 SET SET domain
ENSRNOP00000060531 PF03604 0.00049 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit

Gene Ontology Annotation
Protein Entry Name Space Description
ENSRNOP00000060531 GO:0006351 biological_process transcription, DNA-templated
ENSRNOP00000060531 GO:0006355 biological_process regulation of transcription, DNA-templated
ENSRNOP00000060531 GO:0005634 cellular_component nucleus
ENSRNOP00000060531 GO:0003677 molecular_function DNA binding
ENSRNOP00000060531 GO:0046872 molecular_function metal ion binding

Orthologs
TAXID Organism Gene ID TAXID Organism Gene ID
10029 Cricetulus griseus 100752747 9555 Papio anubis 101004442
7668 Strongylocentrotus purpuratus 589504 9358 Choloepus hoffmanni ENSCHOG00000005730
9371 Echinops telfairi ENSETEG00000011954 9685 Felis catus ENSFCAG00000003804
9595 Gorilla gorilla ENSGGOG00000024584 30608 Microcebus murinus ENSMICG00000005048
9544 Macaca mulatta ENSMMUG00000003772 9669 Mustela putorius furo ENSMPUG00000006857
30611 Otolemur garnettii ENSOGAG00000028747 9813 Procavia capensis ENSPCAG00000007623
9601 Pongo abelii ENSPPYG00000015366 13735 Pelodiscus sinensis ENSPSIG00000002344
9598 Pan troglodytes ENSPTRG00000008502 42254 Sorex araneus ENSSARG00000000244
9823 Sus scrofa ENSSSCG00000026662 37347 Tupaia belangeri ENSTBEG00000001699
9646 Ailuropoda melanoleuca ENSAMEG00000001460 9913 Bos taurus ENSBTAG00000002158
9483 Callithrix jacchus ENSCJAG00000010419 10020 Dipodomys ordii ENSDORG00000001048