Basic Information | |||
Gene ID | 797246 | ||
Gene Name | sox18; si:ch211-235f6.2 | ||
Full Name | Uncharacterized protein | ||
Organism | Danio rerio [7955] |
Cross Reference | |||
UniProt | E7F9I2 | UniGene | Dr.88332 |
PDB | NULL | OMIM | NULL |
KEGG | dre:797246 | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | NULL |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
XP_001337702 | Gene3D | G3DSA:1.10.30.10 | IPR009071 | 93 | 169 | 4.40e-31 | High mobility group box domain |
XP_001337702 | Pfam | PF00505 | IPR009071 | 94 | 162 | 1.40e-21 | High mobility group box domain |
XP_001337702 | Pfam | PF12067 | IPR021934 | 206 | 429 | 5.10e-46 | Sox C-terminal transactivation domain |
XP_001337702 | ProSiteProfiles | PS50118 | IPR009071 | 94 | 162 | 0.00e-00 | High mobility group box domain |
XP_001337702 | ProSiteProfiles | PS51516 | IPR021934 | 314 | 430 | 0.00e-00 | Sox C-terminal transactivation domain |
XP_001337702 | SMART | SM00398 | IPR009071 | 93 | 163 | 9.20e-27 | High mobility group box domain |
XP_001337702 | SUPERFAMILY | SSF47095 | IPR009071 | 93 | 172 | 0.00e-00 | High mobility group box domain |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
XP_001337702 | PF12067 | 0 | Sox_C_TAD | Sox C-terminal transactivation domain |
XP_001337702 | PF00505 | 6.8e-22 | HMG_box | HMG (high mobility group) box |
XP_001337702 | PF09011 | 3.8e-08 | HMG_box_2 | HMG-box domain |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
XP_001337702 | GO:0006351 | biological_process | transcription, DNA-templated |
XP_001337702 | GO:0006355 | biological_process | regulation of transcription, DNA-templated |
XP_001337702 | GO:0007275 | biological_process | multicellular organismal development |
XP_001337702 | GO:0045944 | biological_process | positive regulation of transcription from RNA polymerase II promoter |
XP_001337702 | GO:0005634 | cellular_component | nucleus |
XP_001337702 | GO:0003677 | molecular_function | DNA binding |
XP_001337702 | GO:0043565 | molecular_function | sequence-specific DNA binding |