Submit query
     
Click here to show/hide the option menu Clear this form Show help for the chosen program
  • Select the program of choice.
  • Paste your query in the query box. Click Submit button to pass on the query with default options. Please note that some programs might have some options/parameters that are required. Also note that SeWeR doesn't check whether the required option(s)/parameter(s) is supplied or not. See program description for details.
  • Click Options button to fill up options. The button is a toggle. Clicking it again will close the option.
  • Click Customize to customize this search. Fill up all the options that you require, then click Customize. SeWeR will open another window with a customized page. Save that file on your computer.
  • Click Help to check the help page of the selected program. SeWeR will open a new window to show the help page.
  • Click Submit to pass on the query. SeWeR will open a new window for results.
Home | NucleicAcid | Protein | Database | PCR | Alignment | Tools | Bookmarklets | Customize

Copyright © 2000, 2003, 2004 Malay Kumar Basu
Send your comments/suggestions/bug-report to me:
malay@bioinformatics.org
Disclaimer

Program Name

entrez protein search
Search exclude patents   
From To
Use the format YYYY/MM/DD; month and day are optional.

protparam

Enter a Swiss-Prot/TrEMBL accession number (AC) (for example P05130) or a sequence identifier (ID) (for example KPC1_DROME)

psipred

Prediction method

Predict Secondary Structure (PSIPRED v2.3)

Predict Transmembrane Topology (MEMSAT)

Fold Recognition(GenTHREADER - quick)

Fold Recognition (mGenTHREADER - with profiles and predicted secondary structure)

Output options

Don't return PSI-BLAST output (default)

Return PSI-BLAST hits only

Return PSI-BLAST hits and alignments

E-mail address (required)

Password (only required for commercial e-mail addresses)

Short name for sequence

scanprosite

Scan patterns

Scan profiles

Scan rules

Exclude patterns with a high probability of occurrence

Entrez
Search for a protein sequence using Enterz at NCBI server. Input type-key-words. Required option-none.
ProtParam
Calculate different physico-chemical parameters of a protein sequence. Input type-protein sequence. Required option-none
PSIPRED
Secondary structure Prediction. Winner of Critical Assessment of Protein Structure Prediction 1998 (CASP3). Correct upto 77%. Input type-protein sequence. Required option- email address.
ScanProsite
Search for PROSITE pattern in your protein sequence. Input type-protein sequence. Required option-none.