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[ Ticket #564 ] Import from varstep wiggle format
Date:
12/10/08 07:07
Submitted by:
glyn_dk 		Assigned to:
unset
Category:
input related bugs 		Priority:
5
Ticket group:
reproducible 		Resolution:
Resolved
Summary:
Import from varstep wiggle format
Original submission:
(running: CATCH3 svn rev 205)

1 Open file handler 'import files'
2 Add a varstep signal file (not attached: file size too big)
3 Add a position file with positions only for chr1 (peaktrack_example_chr1.bed)
4 Click 'convert and add to CATCH'

There is no change in visual display.
There is no console output.
There is approx 100% cpu usage.

I waited for a while and then killed it.
Either the processing is taking very long, or there must be an
infinite loop somewhere...
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Followups
Comment Date By
From Berry:
Alright, so the bug wasn't in reading var-files, it's caused by the first line ("track type=wiggle_0 ...").
When the line didn't match any of the existing patterns, I didn't clear it, so rather than reading a new line I'd keep on using the same line. That's fixed now, and so are the places where I'd set currentline to an empty string rather than to null. 		01/05/09 09:31 glyn_dk
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Ticket change history
Field Old value Date By
status_id Unset 01/05/09 09:31 glyn_dk
resolution_id Unset 01/05/09 09:31 glyn_dk
close_date 12/31/69 19:00 01/05/09 09:31 glyn_dk

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