[Next-Generation Sequencing Book]

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[ Ticket #681 ] backslash in pwig filenames
Date:
01/06/09 06:57
Submitted by:
glyn_dk 		Assigned to:
glyn_dk
Category:
conversion wig -> pwig 		Priority:
5
Ticket group:
reproducible 		Resolution:
Resolved
Summary:
backslash in pwig filenames
Original submission:
- Import files (Advanced view)
- import and select one or more wig files
- import and select a bed file
- click 'convert selected'

Bug:
- The generated pwig files appear in the list of the wig files
- The filenames of the generated pwig files contain backslashes instead of slashes, resulting in a long filename instead of indicating the path of the file

How to solve:
- Find out where the backslashes '' are introduced in the filename, replace them by slash '/'
- Ensure that the pwig files are added to the list of pwig files and not the list of wig files
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Followups
Comment Date By
Fixed in rev 227

// Quick and ugly fix for the delimiter
String os = System.getProperty("os.name").toLowerCase();
String delimiter = "/"; // slash for most linux and *nix systems
if (os.contains("windows") || os.contains("nt")){
delimiter = "\"; // backslash for windows
}

String trackname = path + delimiter + BEDname + "_" + wigglename + ".pwig";


fixed the list problem in FileInterfaceGUI:

this line:
DefaultListModel pwigs = (DefaultListModel)wigList.getModel();

changed to:
DefaultListModel pwigs = (DefaultListModel)pwigList.getModel(); 		01/08/09 10:06 glyn_dk
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Ticket change history
Field Old value Date By
status_id Unset 01/08/09 10:06 glyn_dk
assigned_to unset 01/08/09 10:06 glyn_dk
resolution_id Unset 01/08/09 10:06 glyn_dk
close_date 12/31/69 19:00 01/08/09 10:06 glyn_dk

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