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Biopython API documentation: Bio.GenBank  
Code to work with GenBank

Classes: Iterator Iterate through a file of GenBank entries Dictionary Access a GenBank file using a dictionary interface. ErrorFeatureParser Catch errors caused during parsing. FeatureParser Parse GenBank data in Seq and SeqFeature objects. RecordParser Parse GenBank data into a Record object. NCBIDictionary Access GenBank using a dictionary interface.

_BaseGenBankConsumer A base class for GenBank consumer that implements some helpful functions that are in common between consumers. _FeatureConsumer Create SeqFeature objects from info generated by the Scanner _RecordConsumer Create a GenBank record object from Scanner info. _PrintingConsumer A debugging consumer.

_Scanner Set up a Martel based GenBank parser to parse a record.

ParserFailureError Exception indicating a failure in the parser (ie. scanner or consumer) LocationParserError Exception indiciating a problem with the spark based location parser.

Functions: index_file Get a GenBank file ready to be used as a Dictionary. search_for Do a query against GenBank. download_many Download many GenBank records.

Modules and Packages   



Hold GenBank data in a straightforward format.

Code to work with GenBank

Martel based parser to read GenBank formatted files.


Useful utilities for helping in parsing GenBank files.

Table of Contents

This document was automatically generated on Mon Jul 1 12:02:49 2002 by HappyDoc version 2.0.1