gp_gc
GP
2000
NAME
gp_gc - 1
SYNOPSIS
gp_gc [-m] [-q] [-v] [-d] [-h] [inputfile] [outputfile]
OPTIONS
- -m
- Computates only a total mean and variance for all read
sequences.
- -v
- Prints the version information.
- -d
- Prints lots of debugging information.
- -h
- Shows usage information.
- inputfile
- File to process, use - to instruct yodl to read
from stdin.
DESCRIPTION
gp_gc prints out the GC contents of a DNA or RNA sequence.
EXAMPLES
To computate the GC contents of a sequence contained in the
file orf.fasta, type
gp_gc orf.fasta
To computate a mean GC contents of all sequences contained in
the file all.orfs.seq, type
gp_gc -m all.orfs.seq
SEE ALSO
Genpak(1)
gp_acc(1)
gp_cusage(1)
gp_digest(1)
gp_dimer(1)
gp_findorf(1)
gp_getseq(1)
gp_map(1)
gp_matrix(1)
gp_mkmtx(1)
gp_pattern(1)
gp_primer(1)
gp_qs(1)
gp_randseq(1)
gp_seq2prot(1)
gp_slen(1)
gp_tm(1)
gp_trimer(1)
DIAGNOSTICS
All Genpak programs complain in situations you would also complain,
like when they cannot find a sequence you gave them or the sequence is not
valid.
The Genpak programs do not write over existing files. I have found this
feature very useful :-)
BUGS
I'm sure there are plenty left, so please mail me if you find them. I tried
to clean up every bug I could find.
AUTHOR
January Weiner III
<january@bioinformatics.org>