gp_gc - 1
gp_gc [-m] [-q] [-v] [-d] [-h] [inputfile] [outputfile]
- Computates only a total mean and variance for all read
- Prints the version information.
- Prints lots of debugging information.
- Shows usage information.
- File to process, use - to instruct yodl to read
gp_gc prints out the GC contents of a DNA or RNA sequence.
To computate the GC contents of a sequence contained in the
file orf.fasta, type
To computate a mean GC contents of all sequences contained in
the file all.orfs.seq, type
gp_gc -m all.orfs.seq
All Genpak programs complain in situations you would also complain,
like when they cannot find a sequence you gave them or the sequence is not
The Genpak programs do not write over existing files. I have found this
feature very useful :-)
I'm sure there are plenty left, so please mail me if you find them. I tried
to clean up every bug I could find.
January Weiner III