gp_pattern - computate frequencies of nucleotide patterns
[-H] [-q] [-v] [-d] [-h] [inputfile] [outputfile]
- -l value
- set pattern length
- Output in HTML mode
- Prints the version information.
- Do not display error messages
- Prints lots of debugging information.
- Shows usage information.
- file to proces; if not given, will use standard input
- file to write the data to; if not given, will
use standard output
gp_dimer records frequencies of patterns. The pattern length is set with
the -l option. Beware: the number of possible patterns grows
exponentially, so setting pattern length greater then 6 can be dangerous. You
must use this program only with DNA/RNA sequences.
All Genpak programs complain in situations you would also complain,
like when they cannot find a sequence you gave them or the sequence is not
The Genpak programs do not write over existing files. I have found this
feature very useful :-)
I'm sure there are plenty left, so please mail me if you find them. I tried
to clean up every bug I could find.
January Weiner III