[BiO BB] Fasta file of KEGG pathways

[Samantha Fox]

Is there a good quick and dirty way to find the genes involved in a
particular KEGG pathway .. for a particular organism, say Drosophila ?

Cheers...

On 1/19/06, govind mk <mkgovindis at yahoo.com> wrote:
>
> Is this what you are looking for
>
> ftp://ftp.genome.jp/pub/kegg/tarfiles/
>
> -govind
>
>
> *forward at hongyu.org* wrote:
>
> I am wondering whether anyone has a downloable file containing all protein
> sequences of KEGG pathway (e.g., in FASTA format)? I remember seeing it
> somewhere on KEGG website, but I couldn't find it anymore.
>
> Basically, I want to BLAST my query sequences against the file to find
> out the pathway information of my sequences. I can't use the web
> interface of KEGG directly because I have too many sequences to query. It
> would be nice if I can download a local copy.
>
> Thanks!
>
> --
> Hongyu Zhang, Ph.D.
> Computational Biologist
> Ceres Inc.
> 1535 Rancho Conejo Blvd
> Thousand Oaks, CA 91320
> Phone: (805)376-6504 ext 1204
>
>
>
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