[BiO BB] Smith-Waterman on FPGA

[Pedro Fernandes]

I haven't tried, but I guess that http://www.clccube.com/flexible.html has it
ready for testing, in a box wuth USB connection.

-- 
Pedro Fernandes


Quoting Deepan Chakravarthy <codeshepherd at gmail.com>:

> Hello,
>  I am curious to know if anyone has programmed Smith-Waterman algorithm
> into FPGA. I guess FPGA is being used to run BLAST. Anyone who is
> currently playing with FPGA and any of the sequence alignment
> algorithms please share your experience.
> Thanks
> Deepan Chakravarthy N
> http://www.codeshepherd.com
>
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