[BiO BB] Smith-Waterman on FPGA

Pedro Fernandes pfern at igc.gulbenkian.pt
Tue Oct 17 08:57:58 EDT 2006

I haven't tried, but I guess that http://www.clccube.com/flexible.html has it
ready for testing, in a box wuth USB connection.

Pedro Fernandes

Quoting Deepan Chakravarthy <codeshepherd at gmail.com>:

> Hello,
>  I am curious to know if anyone has programmed Smith-Waterman algorithm
> into FPGA. I guess FPGA is being used to run BLAST. Anyone who is
> currently playing with FPGA and any of the sequence alignment
> algorithms please share your experience.
> Thanks
> Deepan Chakravarthy N
> http://www.codeshepherd.com
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