[BiO BB] Smith-Waterman on FPGA
marty.gollery at gmail.com
Tue Oct 17 08:57:49 EDT 2006
Quite a few people have done this, Deepan. It is much easier than BLAST!
Compugen, TimeLogic, Progeniq, CLCbiosystems, Adaptive Genomics, Mitrion,
and several academic groups have ported it.
On 10/16/06, Deepan Chakravarthy <codeshepherd at gmail.com> wrote:
> I am curious to know if anyone has programmed Smith-Waterman algorithm
> into FPGA. I guess FPGA is being used to run BLAST. Anyone who is
> currently playing with FPGA and any of the sequence alignment
> algorithms please share your experience.
> Deepan Chakravarthy N
> General Forum at Bioinformatics.Org -
> BiO_Bulletin_Board at bioinformatics.org
Center For Bioinformatics
University of Nevada at Reno
Dept. of Biochemistry / MS330
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