[BiO BB] Seperation of Protein PDB into multiple units having binding sites
skhadar at gmail.com
Mon Sep 25 03:44:09 EDT 2006
To get a hold of all teminology related to subunits and subdomains
Grab the book and Read it once or twice :)
Bioinformatics : Genes, Proteins & Computers
Eds. Christine Orengo and JM Thornton
To split your proteins try with PROTEIN PEELING approach,
Web Server is available here : http://www.ebgm.jussieu.fr/~gelly/
Happy splitting with your proteins,
NCBS - TIFR
On 9/23/06, Kalidas Yeturu <ykalidas at gmail.com> wrote:
> Hello Everyone
> I am working on protein binding sites. I am not yet very much familiar
> with terminology - subunits,domains etc.,
> My work requires obtaining/splitting a protein PDB into various
> structural units such that each has binding site.
> For example 1A4G neuraminidase has two structural units - chain A and
> chain B both having binding sites.
> But splitting a PDB based on chain-id alone, may not always be correct.
> Some manually curated database would be better.
> I would be grateful if anyone can cite a database where protein-PDB files
> corresponding to structural units having binding sites are provided for each
> Thanking You
> Kalidas Y
> General Forum at Bioinformatics.Org -
> BiO_Bulletin_Board at bioinformatics.org
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