[Biococoa-dev] WWDC 2005 BioCocoa meeting
biococoa at bioworxx.com
Sat May 28 16:39:55 EDT 2005
great to hear about the meeting. I want to give some suggestions for
> Topics being covered during presentation:
> - introduction to BioCocoa
Motivation, why we are doing this. Especially why cocoa and not using
biojava or other frameworks.
> - framework structure and layout
This is what i especially want to talk about. I have many many things
to contribute to the framework and we definitly need to discuss where
to place it.
> - design principles and choices
> - current status
> - future plans
This is the point we have to discuss in the list. what exactly
everybody wants the framework to be.
So i will start:
Basic datastructures shoud be provided:
Sequences, Alignments, Annotations, Protein Structures and more
Classes to access common databases like genbank, pdb etc.
I want to provide HMMs for sequence analysis
> - Q&A, discussion
so this were my fist sponaneous ideas.
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