[Biococoa-dev] [ANN] EnzymeX3

[Alexander Griekspoor]

Thanks Peter!
I see it as a nice advertisement of BioCocoa, and of course in the  
future its foundation can become the new BioCocoa. If there are  
aspects/code snippets you would like to see shared for use in  
BioCocoa I'm happy to consider that..
Cheers,
Alex


On 31-mrt-2006, at 10:20, Peter Schols wrote:

> The best got even better...
> Congratulations to Alex and Tom for this great release! My personal  
> favorite is the virtual digest, but the entire app is a poster  
> child for Mac OS X. Wow!
>
> And of course I'm happy to see BioCocoa included.
> Keep up the great work!
>
> Peter
>
>
> On 31 Mar 2006, at 09:56, Alexander Griekspoor wrote:
>
>> Hi Guys,
>>
>> Just to let you know that Tom and I have released EnzymeX 3, the  
>> second app that uses the BioCocoa standalone reader to read  
>> sequence files.
>> Check it out at mekentosj.com!
>> Cheers,
>> Alex
>>
>> ******************************
>> Announcement: EnzymeX 3 - To cut or not to cut, no longer a question!
>>
>> Amsterdam, March 31st 2006
>>
>> Mek & Tosj like to announce a completely rewritten version of one  
>> their most popular programs, EnzymeX. EnzymeX has become a  
>> favorite tool of many molecular biologists using a mac. It is a  
>> program developed to help them determine which restriction enzymes  
>> they should use to cut their DNA of interest. In addition, it  
>> gives all the specific properties of these enzymes to make sure  
>> that every digestion is a success.
>> One of the most requested features people wanted to see in EnzymeX  
>> was the ability to load their DNA of interest and analyze where  
>> exactly the different enzymes would cut. Sure there are other  
>> programs that can do this, but why do they have to look like  
>> coming straight from the 1980's or from another platform? Now the  
>> long wait is over and we have finally created a DNA sequence  
>> editor that brings all those features and the look and feel you  
>> can expect to come with a true MacOSX program.
>>
>> New in EnzymeX 3:
>> What is not? We have completely redesigned the program, too many  
>> new things too mention.
>> Here are a few a the main new features:
>> 	- Support of many DNA sequence formats through the BioCocoa core
>> 	- Direct download of sequences from NCBI's Entrez DNA database
>>     	- Finding of Open Reading Frames and translation from DNA to  
>> Protein
>>     	- Enzyme Restriction maps
>>     	- Smart Quick Search, with Motifs searches
>>     	- Mini enzyme inspector showing all the enzyme info you ever  
>> need
>> 	- EnzymeX plugin architecture for custom extensions
>> 	- And much much more...
>>
>> You can find more information about EnzymeX at: http:// 
>> www.mekentosj.com/enzymex
>> Download EnzymeX directly from: http://www.mekentosj.com/enzymex/ 
>> enzymex.dmg
>>
>> Mek & Tosj are Alexander Griekspoor and Tom Groothuis, two phD  
>> students at the 4th floor of the Netherlands Cancer Institute.  
>> Headed by the characteristic professor Sjaak Neefjes, we are doing  
>> cell biological research studying the immune system and cellular  
>> transport. To make our lives a little bit less complicated, we  
>> wrote LabAssistant, a tool to organize scientific experiments,  
>> notes, reminders, etc. (http://www.mekentosj.com/labassistant),  
>> and iRNAi, a program to easily find an generate the building  
>> blocks for a technique called RNA interference. With our latest  
>> and most popular program 4Peaks we won the Apple Design Award for  
>> best MacOSX student project in 2004.
>>  Today we have released a complete new version of our popular  
>> program for molecular biologists: EnzymeX 3
>>
>> Sincerly,
>> Mek & Tosj
>>
>> Alexander Griekspoor
>> Tom Groothuis
>> ********************************************************
>>                     ** Alexander Griekspoor **
>> *********************************************************
>>               The Netherlands Cancer Institute
>>               Department of Tumorbiology (H4)
>>          Plesmanlaan 121, 1066 CX, Amsterdam
>>                   Tel:  + 31 20 - 512 2023
>>                   Fax:  + 31 20 - 512 2029
>>                   E-mail: a.griekspoor at nki.nl
>>             AIM: mekentosj at mac.com
>>               Web: http://www.mekentosj.com
>>
>>                  EnzymeX - To cut or not to cut
>>              http://www.mekentosj.com/enzymex
>>
>> *********************************************************
>>
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*********************************************************
                       ** Alexander Griekspoor **
*********************************************************
                 The Netherlands Cancer Institute
                 Department of Tumorbiology (H4)
           Plesmanlaan 121, 1066 CX, Amsterdam
                     Tel:  + 31 20 - 512 2023
                     Fax:  + 31 20 - 512 2029
                    AIM: mekentosj at mac.com
                     E-mail: a.griekspoor at nki.nl
                 Web: http://www.mekentosj.com

           LabAssistant - Get your life organized!
           http://www.mekentosj.com/labassistant

*********************************************************

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