[Biococoa-dev] biococoa svn and everything

Koen van der Drift kvddrift at earthlink.net
Tue Sep 11 20:39:22 EDT 2007

Hi Davide and Scott,

Welcome to the BioCocoa team! It's good to see some new blood in the  
project, and to know that there is still interest in the framework.

Not sure if you already found this info on our wiki page, but here  
you can read about how to commit files to the project:



- Koen.

On Sep 11, 2007, at 3:12 PM, Scott Christley wrote:

> Hello Davide,
> If you send me a patch with your changes, I can apply it to the  
> repository.  You would need to be given developer access in order  
> to commit the changes yourself.
> As for testing, there is a target in the Xcode project called "Test  
> - BCFoundation" which tests some of the classes, it is not a  
> comprehensive test suite but it does check a number of things.  If  
> you build that target, it automatically runs the tests; you can see  
> the output of the tests in the Build Results windows, specifically  
> the Build Transcripts view in the middle section.  I don't believe  
> there are any BCSequenceReader tests yet, maybe you would like to  
> donate the first one with a simple test for the macvector format?
> cheers
> Scott
> On Sep 11, 2007, at 10:17 AM, Davide Cittaro wrote:
>> Hi there, after some time I've decided to open biococoa framework  
>> and try my very first cocoa coding experience.
>> I've added a method to BCSequeceReader so that one can read  
>> sequences from macvector. I would like to commit my changes but  
>> biococoa website (and bioinformatics.org after all) is not  
>> available at this time.
>> Also I would like to test annotation parsing capabilities, but the  
>> demo provided (translation and peptides) only manage sequences...  
>> Is there software built on BioCocoa I can use to test the  
>> framework extensively?
>> Thanks
>> d
>> /*
>> Davide Cittaro
>> HPC and Bioinformatics Systems @ Informatics Core
>> IFOM - Istituto FIRC di Oncologia Molecolare
>> via adamello, 16
>> 20139 Milano
>> Italy
>> tel.: +39(02)574303007
>> e-mail: davide.cittaro at ifom-ieo-campus.it
>> */
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