[cmview-devel] Fwd: Re: Fwd: Bug report - PyMol frequently crashing when used by CMView

Jose Duarte jose.duarte at psi.ch
Fri Nov 4 04:45:35 EDT 2011

Sending this to the list again as it didn't reach it. I simply hit on 
"reply all" but it seems that the "reply-to" field contains the address 
cmview-devel at www.bioinformatics.org. The prefixing "www" makes it fail.

Should we tell Jeff? Is this happening for you too guys? What happens 
when you "reply-all" or "reply to list"?


-------- Original Message --------
Subject: 	Re: [cmview-devel] Fwd: Bug report - PyMol frequently crashing 
when used by CMView
Date: 	Fri, 04 Nov 2011 09:41:29 +0100
From: 	Jose Duarte <jose.duarte at psi.ch>
To: 	cmview-devel at www.bioinformatics.org, thomas.hopf at gmail.com
CC: 	deboramarks at gmail.com

Hi Thomas and all

Thanks a lot for the bug report and sorry for the late reply.

You mention that you attached the console output and log from MacOS.
Unfortunately that didn't reach here after the long chain of emails...
Could you send that again (copying the cmview-devel at bioinformatics.org
list)? Also it would be helpful to know if you have tried in other OS
apart from MacOS, can you reproduce the error in Windows or Linux?



On 11/04/2011 09:21 AM, Henning Stehr wrote:
>  Hi all,
>  I am forwarding a message from Michael with a bug report by an
>  otherwise happy user of CMView.
>  Cheers,
>  Henning
>  Begin forwarded message:
>  Dear all -
>  finally I am getting near the bottom of the pile -
>  sorry for not forwarding / responding earlier (mea culpa)
>  I couldn't reproduce the error Thomas mailed me -
>  but I am running cmview 1.1.rc6 with pymol 1.2r2
>  so is the new pymol the cuplprit?
>  A wild guess would be that the feature of highlighting the
>  current contact in the 3D view creates a memory problem/leak in pymol ...
>  just don't know if there's a simple switch in cmview-config file to
>  turn that off.
>  hope that helps with bugtracking, cheers .\\ichael
>  Begin forwarded message:
>  From: Thomas Hopf<thomas.hopf at gmail.com>
>  Date: September 26, 2011 6:52:28 PM GMT+02:00
>  To: Michael Lappe<drmlappe at googlemail.com>
>  Cc: deboramarks at gmail.com
>  Subject: CMView/MacPyMOL crashes
>  Dear Dr Lappe,
>  thanks for providing the CMView software, it is really good and
>  useful. However, I have some trouble using it because it crashes
>  frequently.
>  The crash occurs 100% reproducibly after some time (few minutes), in
>  which I do nothing else but selecting some of the contacts in CMView
>  and rotating the protein in MacPymol. At some point, MacPymol crashes
>  and the CMView process has to be killed because it puts the CPU under
>  heavy load. I attached both the console output by CMView 1.1.1 and the
>  log given by MacOS 10.6.8 upon MacPymol 1.3 crashing.
>  Hope this helps in identifying the problem.
>  Best wishes,
>  Thomas Hopf
>  Am 26.09.11 11:38, schrieb Debora Marks:
>  Micheal
>  Hi there !!
>  You may want to re-login to the web page I gave you a while back to
>  see the updated paper and supplement. Its really changed so I
>  recommend it
>  In the meanwhile, Thomas, a student of mine, is having some 'crashing
>  ' issues with CMView ( which is GREAT) and will drop you a line about
>  it
>  Debbie
>  _______________________________________________
>  cmview-devel mailing list
>  cmview-devel at www.bioinformatics.org
>  http://www.bioinformatics.org/mailman/listinfo/cmview-devel

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