[cmview-devel] Fwd: Re: Fwd: Bug report - PyMol frequently crashing when used by CMView

[Jose Duarte]

Actually I've just realised that this could be a problem of thunderbird 
only. It happened when I use "reply to list" but not when I use "reply 
all". It doesn't seem to happen with gmail either. Maybe I should 
finally drop thunderbird once and for all ;)

Jose


On 11/04/2011 09:45 AM, Jose Duarte wrote:
> Sending this to the list again as it didn't reach it. I simply hit on 
> "reply all" but it seems that the "reply-to" field contains the 
> address cmview-devel at www.bioinformatics.org. The prefixing "www" makes 
> it fail.
>
> Should we tell Jeff? Is this happening for you too guys? What happens 
> when you "reply-all" or "reply to list"?
>
> Jose
>
>
>
> -------- Original Message --------
> Subject: 	Re: [cmview-devel] Fwd: Bug report - PyMol frequently 
> crashing when used by CMView
> Date: 	Fri, 04 Nov 2011 09:41:29 +0100
> From: 	Jose Duarte <jose.duarte at psi.ch>
> To: 	cmview-devel at www.bioinformatics.org, thomas.hopf at gmail.com
> CC: 	deboramarks at gmail.com
>
>
>
> Hi Thomas and all
>
> Thanks a lot for the bug report and sorry for the late reply.
>
> You mention that you attached the console output and log from MacOS.
> Unfortunately that didn't reach here after the long chain of emails...
> Could you send that again (copying thecmview-devel at bioinformatics.org
> list)? Also it would be helpful to know if you have tried in other OS
> apart from MacOS, can you reproduce the error in Windows or Linux?
>
> Cheers
>
> Jose
>
>
>
> On 11/04/2011 09:21 AM, Henning Stehr wrote:
> >  Hi all,
> >
> >  I am forwarding a message from Michael with a bug report by an
> >  otherwise happy user of CMView.
> >
> >  Cheers,
> >  Henning
> >
> >
> >  Begin forwarded message:
> >
> >  Dear all -
> >
> >  finally I am getting near the bottom of the pile -
> >  sorry for not forwarding / responding earlier (mea culpa)
> >
> >  I couldn't reproduce the error Thomas mailed me -
> >  but I am running cmview 1.1.rc6 with pymol 1.2r2
> >  so is the new pymol the cuplprit?
> >
> >  A wild guess would be that the feature of highlighting the
> >  current contact in the 3D view creates a memory problem/leak in pymol ...
> >  just don't know if there's a simple switch in cmview-config file to
> >  turn that off.
> >
> >  hope that helps with bugtracking, cheers .\\ichael
> >
> >  Begin forwarded message:
> >
> >  From: Thomas Hopf<thomas.hopf at gmail.com>
> >
> >  Date: September 26, 2011 6:52:28 PM GMT+02:00
> >
> >  To: Michael Lappe<drmlappe at googlemail.com>
> >
> >  Cc:deboramarks at gmail.com
> >
> >  Subject: CMView/MacPyMOL crashes
> >
> >  Dear Dr Lappe,
> >
> >  thanks for providing the CMView software, it is really good and
> >  useful. However, I have some trouble using it because it crashes
> >  frequently.
> >
> >  The crash occurs 100% reproducibly after some time (few minutes), in
> >  which I do nothing else but selecting some of the contacts in CMView
> >  and rotating the protein in MacPymol. At some point, MacPymol crashes
> >  and the CMView process has to be killed because it puts the CPU under
> >  heavy load. I attached both the console output by CMView 1.1.1 and the
> >  log given by MacOS 10.6.8 upon MacPymol 1.3 crashing.
> >
> >  Hope this helps in identifying the problem.
> >
> >  Best wishes,
> >
> >  Thomas Hopf
> >
> >  Am 26.09.11 11:38, schrieb Debora Marks:
> >
> >  Micheal
> >
> >  Hi there !!
> >
> >  You may want to re-login to the web page I gave you a while back to
> >  see the updated paper and supplement. Its really changed so I
> >  recommend it
> >
> >  In the meanwhile, Thomas, a student of mine, is having some 'crashing
> >  ' issues with CMView ( which is GREAT) and will drop you a line about
> >  it
> >
> >  Debbie
> >  _______________________________________________
> >  cmview-devel mailing list
> >  cmview-devel at www.bioinformatics.org
> >  http://www.bioinformatics.org/mailman/listinfo/cmview-devel
>

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